Plant FIBer expression Database

Potri.002G138300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17520 132 / 2e-35 Hyaluronan / mRNA binding family (.1)
AT4G16830 125 / 1e-32 Hyaluronan / mRNA binding family (.1.2.3)
AT5G47210 71 / 1e-13 Hyaluronan / mRNA binding family (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G049300
[exp]
233 / 7e-74 AT4G16830 159 / 2e-46 Hyaluronan / mRNA binding family (.1.2.3)
Potri.003G081600
[exp]
159 / 3e-45 AT4G17520 180 / 2e-53 Hyaluronan / mRNA binding family (.1)
Potri.001G153000
[exp]
147 / 7e-41 AT4G17520 128 / 1e-33 Hyaluronan / mRNA binding family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004362
[exp]
115 / 9e-29 AT4G17520 183 / 1e-54 Hyaluronan / mRNA binding family (.1)
Lus10040157
[exp]
112 / 6e-28 AT4G17520 181 / 1e-53 Hyaluronan / mRNA binding family (.1)
Lus10000599
[exp]
83 / 2e-18 AT4G17520 170 / 7e-52 Hyaluronan / mRNA binding family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04774 HABP4_PAI-RBP1 Hyaluronan / mRNA binding family
PF09598 Stm1_N Stm1
Representative CDS sequence
>Potri.002G138300.1 pacid=42780166 polypeptide=Potri.002G138300.1.p locus=Potri.002G138300 ID=Potri.002G138300.1.v4.1 annot-version=v4.1
ATGGCGACGATCAATCCTTTTGATTTATTGGATGATGACGCTGAGGATCCCTCTCTCATCGCTGCTCAGAAGCCGGTGGTTTCTCCTCCCGCCGCCGCCG
CCGCCGCCGCCAAGAAAGGTTCGGCTCAGACTCAAGCCAAACCGGCGGCTCCTGCTGCTAAGCTGCCTTCCAAGCCTCTTCCTCCTTCACAAGCTGTGAG
GGAGGCAAAGAATGAAGGTGGGAGAGGAGGTCGTGGTGGTGGACGAGGATATGGCCGTGGTCGCGGGGGTTATAATAGGGACTTCAATAATATTGATAGT
TCATTTGCTAACACTGGAGCACCAGCTACGCAAGGGGCTTCTGAAGACGGAGATGCTGGAAAAAGTTCTGAAAGGAGGGGATATGGTGGACCTCGTGCTG
CCAGTGGTTTCCGTGGTGGCCGTCATGGGGGTTTTGCCAATGGAGAAGATGGCGAAGGAGAGCGGCCTCGTCGGATATATGAACGTCGGAGTGGGACTGG
ACATGGAAACGAGATGAAGCGAGAAGGGGCTGGTCGTGGGAACTGGGGAACTCAGACTGATGAACTTGCTGAGATAACTGAGGAAGTTGGCAATGAAGGT
GACAAGAATTTGGGTGATGAGAAACCTGTGACGGAAGCAGCAGCAGATGGGAACAAAGAGAACCTTGATAATGAACCTGGAGAAAAAGAACCAGAGGAAA
AGGAGATGACTCTTGAAGAGTATGAGAAGGTGCTGGAAGAGAAGAGGAAGGCCCTGCTGGCACTTAAGACAGAGGAAAGAAAGGTGGATACCAGAGAGTT
TCAATCCATGCAACAGATTTCAAGCAAGAAGGAAAACAATGATGTCTTTATTAAATTGGGCTCTGACAAGGATAAGCGAAAAGAGGCATCTGAGAAAGCT
AAAAAGTCTGTCAGCATTAACGAGTTCTTGAAGCCTGCTGAAGGGGAAAGGTACCATGGGTCAGGTGGCCGTGGTCGGGGACGTGGCCGCGGAGCAAGAG
GGTTTGGCAATAGAGATGGAATCAGCATCGTGCCAGCCCCTTCCATTGAAGATCCTGGACAATTCCCTACCTTGGGTGGCAAATGA
AA sequence
>Potri.002G138300.1 pacid=42780166 polypeptide=Potri.002G138300.1.p locus=Potri.002G138300 ID=Potri.002G138300.1.v4.1 annot-version=v4.1
MATINPFDLLDDDAEDPSLIAAQKPVVSPPAAAAAAAKKGSAQTQAKPAAPAAKLPSKPLPPSQAVREAKNEGGRGGRGGGRGYGRGRGGYNRDFNNIDS
SFANTGAPATQGASEDGDAGKSSERRGYGGPRAASGFRGGRHGGFANGEDGEGERPRRIYERRSGTGHGNEMKREGAGRGNWGTQTDELAEITEEVGNEG
DKNLGDEKPVTEAAADGNKENLDNEPGEKEPEEKEMTLEEYEKVLEEKRKALLALKTEERKVDTREFQSMQQISSKKENNDVFIKLGSDKDKRKEASEKA
KKSVSINEFLKPAEGERYHGSGGRGRGRGRGARGFGNRDGISIVPAPSIEDPGQFPTLGGK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17520 Hyaluronan / mRNA binding fami... Potri.002G138300
[exp]
0 1
AT4G16830 Hyaluronan / mRNA binding fami... Potri.014G049300
[exp]
1.00 0.8585
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065600
[exp]
3.16 0.8370 Pt-LOS1.2
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
6.70 0.7859
AT2G29690 ATHANSYNAB, ASA... anthranilate synthase 2 (.1) Potri.009G044300
[exp]
8.71 0.8037
AT5G27640 ATTIF3B1, ATEIF... EUKARYOTIC TRANSLATION INITIAT... Potri.006G267500
[exp]
8.83 0.8045 Pt-EIF3.6
AT1G14610 VALRS, TWN2 VALYL TRNA SYNTHETASE, TWIN 2,... Potri.007G004100
[exp]
9.48 0.7609 Pt-VALRS.2
AT1G48380 HYP7, RHL1 HYPOCOTYL 7, root hair initiat... Potri.004G069400
[exp]
10.39 0.7833
AT3G07930 DNA glycosylase superfamily pr... Potri.014G187300
[exp]
12.48 0.7531
AT5G36950 DEGP10 DegP protease 10 (.1) Potri.008G079900
[exp]
13.41 0.7691
AT1G68570 Major facilitator superfamily ... Potri.006G034000
[exp]
13.63 0.7102 NITR1.3

Potri.002G138300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.