Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAB1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02130 394 / 8e-142 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT5G47200 377 / 4e-135 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 375 / 2e-134 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT3G11730 325 / 2e-114 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G59840 249 / 1e-84 Ras-related small GTP-binding family protein (.1) AT3G46060 245 / 6e-83 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 244 / 1e-82 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G03520 236 / 3e-79 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT3G09900 234 / 1e-78 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT1G07410 197 / 6e-64 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G049400 [exp] 416 / 8e-151 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G081800 [exp] 405 / 2e-146 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 396 / 6e-143 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 393 / 9e-142 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G004000 [exp] 340 / 1e-120 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.004G226600 [exp] 338 / 8e-120 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 251 / 4e-85 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 248 / 5e-84 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 247 / 1e-83 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010999 [exp] 382 / 3e-137 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 380 / 2e-136 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10036442 [exp] 327 / 4e-115 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10041117 [exp] 279 / 3e-95 AT3G11730 302 / 3e-104 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10037608 [exp] 263 / 1e-90 AT1G02130 255 / 1e-87 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Lus10005890 [exp] 245 / 8e-83 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 242 / 1e-81 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10007698 [exp] 226 / 2e-75 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 223 / 2e-74 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 223 / 5e-74 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.002G138400.2 pacid=42776991 polypeptide=Potri.002G138400.2.p locus=Potri.002G138400 ID=Potri.002G138400.2.v4.1 annot-version=v4.1 ATGAATCCAGAGTATGATTATTTGTTCAAGCTCCTTCTCATTGGTGATTCTGGTGTTGGCAAATCCTGTCTTCTTCTAAGATTTGCTGATGATTCATATA TTGAGAGTTATATAAGCACCATTGGGGTCGACTTTAAAATACGTACCGTGGAGCAAGATGGGAAAACCATAAAACTCCAAATCTGGGATACTGCTGGGCA AGAAAGATTTAGAACAATTACCAGCAGCTACTACCGCGGGGCACATGGTATCATAGTTGTTTATGATGTGACAGACCAAGAGAGCTTCAACAATGTCAAG CAGTGGCTCAATGAAATTGATCGATATGCTAGTGATAATGTGAACAAACTTCTGGTTGGAAACAAGTCTGATCTCACTGCAAATAAAGTAGTGTCATACG AGACAGCAAAGGCTTTTGCTGATGAGATTGGCATACCTTTCATGGAAACTAGTGCAAAAGATGCCACTAATGTGGAACAAGCTTTCATGGCCATGGCTGC TGCAATCAAGGATAGAATGGCGAGCCAACCAGCCATGAACAACGCAAAACCTTCAACTGTGCAGCTCAGAGGACAGCCTGTTGAACAAAAGGGAGGCTGC TGCTCGTCTTGA
AA sequence Show only first row Show all	>Potri.002G138400.2 pacid=42776991 polypeptide=Potri.002G138400.2.p locus=Potri.002G138400 ID=Potri.002G138400.2.v4.1 annot-version=v4.1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVK QWLNEIDRYASDNVNKLLVGNKSDLTANKVVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAAAIKDRMASQPAMNNAKPSTVQLRGQPVEQKGGC CSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.002G138400 [exp]	0	1	RAB1.3
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.012G033000 [exp]	3.16	0.8021	UBC9.1
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.018G110700 [exp]	4.58	0.7936
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120500 [exp]	5.00	0.7741	Pt-ATRPABC16.2
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	6.48	0.7358	Pt-RAB1.5
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.015G023300 [exp]	11.95	0.7236	Pt-UBC.4
AT3G51100			unknown protein		Potri.005G117400 [exp]	14.96	0.6288
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	19.49	0.7076
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.005G109900 [exp]	20.61	0.7142
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.014G086600 [exp]	21.00	0.7272	Pt-UBC4.2
AT5G58030			Transport protein particle (TR...		Potri.018G110000 [exp]	21.26	0.7959

Compare expression of checked genes

Potri.002G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.