Plant FIBer expression Database

Potri.002G138700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4)
AT2G44770 456 / 2e-164 ELMO/CED-12 family protein (.1)
AT1G67400 294 / 2e-100 ELMO/CED-12 family protein (.1)
AT1G03620 287 / 8e-98 ELMO/CED-12 family protein (.1)
AT3G03610 272 / 5e-91 ELMO/CED-12 family protein (.1)
AT3G43400 182 / 2e-57 ELMO/CED-12 family protein (.1)
AT5G21110 40 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G049800
[exp]
523 / 0 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4)
Potri.010G060700
[exp]
323 / 8e-112 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1)
Potri.008G175301
[exp]
320 / 9e-111 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1)
Potri.013G136200
[exp]
259 / 8e-86 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1)
Potri.013G069000
[exp]
253 / 1e-83 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024285
[exp]
501 / 0 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1)
Lus10003841
[exp]
455 / 8e-162 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Lus10037017
[exp]
316 / 5e-109 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1)
Lus10015790
[exp]
312 / 1e-107 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1)
Lus10039805
[exp]
270 / 2e-91 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1)
Lus10018574
[exp]
268 / 3e-90 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1)
Lus10009523
[exp]
265 / 3e-88 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1)
Lus10020344
[exp]
261 / 7e-87 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04727 ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence
>Potri.002G138700.3 pacid=42777243 polypeptide=Potri.002G138700.3.p locus=Potri.002G138700 ID=Potri.002G138700.3.v4.1 annot-version=v4.1
ATGGATGATAGAGGAGGATCATTTGTGGCTGTGAGGAGGATTTCTCAAGGTCTCGAGCGAGGAAATAATACTTGCCATTCAACTTCTGCTGAGGCTGTGG
CAGGATCAGCAGCGTGGCTTGGCCGTGGTCTTTCTTGTGTTTGTGCACAAAGAAGAGAGAGTGATGCTCGTCCATCATTTGATTTAACCCCTGTACAGGA
GGAATGCTTGCAGAGGTTGCAGAGCCGTATAGATGTTCCCTATGATAGTTCAGTTCTTGATCACCAGGAAGCTTTGAAGACCTTATGGAATGCTGCTTTT
CCTGAAGAAGAACTTCATGGTTTGATATCTGAGCAGTGGAAGGAAATGGGTTGGCAAGGAAAGGATCCATCAACAGATTTTAGGGGTGGTGGTTTTATAT
CATTGGAGAATTTGTTGTTCTTTGCTAGGAATTTTCCGAAGTCCTTTCAGGATCTTCTTCAAAAGAGGGAAGGTGATAGATCAGTATGGGAATACCCATT
TGCTGTAGCTGGTGTGAACATCACGTTTATGCTTATTCAGATGCTTGATCTTGAAGCAGTCAAACCACGAGCACTGGTGGGAGCAACTTTCTTGAAGTTT
CTTGCAGAGAATGACTCGGCATTTGACCTTCTCTATTGCATAACATTCAAGCTTATGGATCATGAATGGCTTACCATGCGCGCCTCCTATATGGACTTCA
ATGCGGTTATGAAATCTACACGCCGTCAACTAGAGAGGGAGCTTCTGTCCGAAGACATAACGCGGCTAGAAGACTTGCCCTCTTACACCCTCCTTACACG
ATAG
AA sequence
>Potri.002G138700.3 pacid=42777243 polypeptide=Potri.002G138700.3.p locus=Potri.002G138700 ID=Potri.002G138700.3.v4.1 annot-version=v4.1
MDDRGGSFVAVRRISQGLERGNNTCHSTSAEAVAGSAAWLGRGLSCVCAQRRESDARPSFDLTPVQEECLQRLQSRIDVPYDSSVLDHQEALKTLWNAAF
PEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNFPKSFQDLLQKREGDRSVWEYPFAVAGVNITFMLIQMLDLEAVKPRALVGATFLKF
LAENDSAFDLLYCITFKLMDHEWLTMRASYMDFNAVMKSTRRQLERELLSEDITRLEDLPSYTLLTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60260 ELMO/CED-12 family protein (.1... Potri.002G138700
[exp]
0 1
AT1G32050 SCAMP family protein (.1) Potri.001G134100
[exp]
1.41 0.9199
AT1G21480 Exostosin family protein (.1.2... Potri.005G187400
[exp]
3.16 0.9120
AT5G53150 DNAJ heat shock N-terminal dom... Potri.015G097500
[exp]
5.29 0.8938
AT5G56750 NDL1 N-MYC downregulated-like 1 (.1... Potri.018G067700
[exp]
5.29 0.9063
AT3G24530 AAA-type ATPase family protein... Potri.018G081000
[exp]
7.48 0.9146
AT1G50120 unknown protein Potri.007G071000
[exp]
10.19 0.9190
AT3G27000 ATARP2, WRM, AR... WURM, actin related protein 2 ... Potri.001G326600
[exp]
11.83 0.9171 Pt-ARP2.1
AT2G45140 PVA12 plant VAP homolog 12 (.1) Potri.001G152000
[exp]
14.89 0.9151
AT2G35020 GlcNAc1pUT2 N-acetylglucosamine-1-phosphat... Potri.001G159700
[exp]
15.49 0.9154
AT4G15830 ARM repeat superfamily protein... Potri.010G014200
[exp]
16.34 0.9180

Potri.002G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.