Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44745 224 / 9e-75 WRKY WRKY12 WRKY family transcription factor (.1) AT4G39410 153 / 1e-45 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G46130 120 / 4e-35 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT1G64000 120 / 3e-34 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT1G69310 122 / 5e-34 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G41570 119 / 5e-34 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT5G56270 119 / 4e-31 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G18170 115 / 5e-31 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G38470 117 / 7e-31 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT3G01080 116 / 7e-31 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050000 [exp] 353 / 2e-125 AT2G44745 224 / 5e-74 WRKY family transcription factor (.1) Potri.007G078200 [exp] 162 / 4e-50 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.005G086400 [exp] 160 / 2e-49 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.001G058800 [exp] 124 / 3e-36 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.014G090700 [exp] 125 / 4e-36 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G164900 [exp] 124 / 1e-35 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.003G169100 [exp] 122 / 3e-35 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.017G066860 [exp] 118 / 1e-33 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.008G103300 [exp] 122 / 2e-33 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020832 [exp] 149 / 2e-44 AT4G39410 169 / 3e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10012678 [exp] 148 / 1e-43 AT4G39410 169 / 4e-50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Lus10036401 [exp] 128 / 6e-37 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10007906 [exp] 125 / 1e-35 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10026409 [exp] 120 / 5e-34 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10017067 [exp] 120 / 1e-32 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10012547 [exp] 114 / 2e-32 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10004612 [exp] 117 / 1e-31 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10037785 [exp] 117 / 1e-31 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10027139 [exp] 120 / 2e-31 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G138900.1 pacid=42778596 polypeptide=Potri.002G138900.1.p locus=Potri.002G138900 ID=Potri.002G138900.1.v4.1 annot-version=v4.1 ATGGATCAAGGAGGAAGAGAAGTTCCAAATTACGGGCTACAAGTCTCTTTCTCTACACCACAAGCAATCCATGAGATGGGTTTTGTTCAATTTGAAGAAA ACCAGGTCTTGAGCTTCTTGGCCCCTTCACAATCTTCTCAGATATCTCAACCGCTCAATACTAATACAACCACCAATAGTCACATGGGGTTTAGTCATAA TGATGAGCAGGTGGGGACAATGGATCCAAAGCCTTCCAGTGACGAGAACTGCACTGGTAATGCTAACAACGATGGCAACAATTCATGGTGGAGGAGCTCA TCCTCAGAGAAAAACAGGTTGAAAGTGAGGAGAAAGCTTAGAGAACCAAGGTTTTGTTTCCAGACAAGGAGCGATGTGGATGTTCTTGATGATGGTTATA AGTGGAGAAAATATGGCCAAAAAGTTGTCAAAAACAGCCTTCATCCAAGAAGCTACTATCGTTGTACTCACAACAACTGTCGAGTGAAGAAGAGGGTTGA AAGATTATCAGAGGATTGTCGAATGGTGATAACAACCTATGAAGGCAGACACAATCACTCTCCATGCGAGGACTCAAATTCATCAGAACATGAGTGCTTT ACCTCTTTCTAA
AA sequence Show only first row Show all	>Potri.002G138900.1 pacid=42778596 polypeptide=Potri.002G138900.1.p locus=Potri.002G138900 ID=Potri.002G138900.1.v4.1 annot-version=v4.1 MDQGGREVPNYGLQVSFSTPQAIHEMGFVQFEENQVLSFLAPSQSSQISQPLNTNTTTNSHMGFSHNDEQVGTMDPKPSSDENCTGNANNDGNNSWWRSS SSEKNRLKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCEDSNSSEHECF TSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	0	1
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.014G050000 [exp]	1.00	0.9086
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	1.73	0.8539
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Potri.019G101900 [exp]	2.00	0.8510
AT2G31800			Integrin-linked protein kinase...		Potri.017G007800 [exp]	3.46	0.8291
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	4.89	0.8552
AT1G30760			FAD-binding Berberine family p...		Potri.011G158700 [exp]	6.24	0.7996
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	6.70	0.8369
AT1G02630			Nucleoside transporter family ...		Potri.018G130200 [exp]	8.36	0.7962
AT1G56130			Leucine-rich repeat transmembr...		Potri.006G255100 [exp]	8.48	0.8135
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.011G148600 [exp]	11.83	0.7612

Compare expression of checked genes

Potri.002G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.