Plant FIBer expression Database

Potri.002G139000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G139000.3 pacid=42777909 polypeptide=Potri.002G139000.3.p locus=Potri.002G139000 ID=Potri.002G139000.3.v4.1 annot-version=v4.1
ATGATGAAACCTTTATTGGATGAAGCATGTCAGATCGGAAAATTTGTTCAGGAGCTTGGAGAAAGTAGAGGGCACACCAGAGACACTGTCGAGAAACAAA
CTGATATGGTGAATCAGTTTTGGGATATAATAAAGAAAATTATGCAGCCACTCCCTGGTGGAAGCGGCAGCATATCTGCCTCCACAGACAAGGATGCTTA
CCCACCACTAGAGCTATCTGTTGCAGCCATTAAGTCAGATGGATCAGTAACGACAGAGTCATTCAAACCGTGCCAATCACTCCCCGAGGAGTGGACCCAG
CTGGCAATGGGGGGACAAGAGCGGCTGATACGGGCCTTCTTTGGGCTCAGGGAGCATTATACGGCCACAACAGCACACCATGCACGGGAGATAGCAGACC
GTGACCAAGAGCTGATAAACTTGAAGGAGGAGCTTGCGAGGGCTGAGGCCATGCCTTATAAGATCTTATTCGAAGAAAAAGAGCCACCAGAATTGTAG
AA sequence
>Potri.002G139000.3 pacid=42777909 polypeptide=Potri.002G139000.3.p locus=Potri.002G139000 ID=Potri.002G139000.3.v4.1 annot-version=v4.1
MMKPLLDEACQIGKFVQELGESRGHTRDTVEKQTDMVNQFWDIIKKIMQPLPGGSGSISASTDKDAYPPLELSVAAIKSDGSVTTESFKPCQSLPEEWTQ
LAMGGQERLIRAFFGLREHYTATTAHHAREIADRDQELINLKEELARAEAMPYKILFEEKEPPEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G139000
[exp]
0 1
AT1G11050 Protein kinase superfamily pro... Potri.017G133000
[exp]
6.40 0.9027
AT5G07670 RNI-like superfamily protein (... Potri.002G143200
[exp]
6.70 0.8782
AT5G05190 Protein of unknown function (D... Potri.019G061400
[exp]
8.77 0.8802
AT1G32690 unknown protein Potri.001G141600
[exp]
9.21 0.8869
AT1G73880 UGT89B1 UDP-glucosyl transferase 89B1 ... Potri.012G065100
[exp]
10.95 0.8900
AT1G11050 Protein kinase superfamily pro... Potri.017G132800
[exp]
13.11 0.9002
AT4G14570 AtAARE, AARE acylamino acid-releasing enzym... Potri.008G160400
[exp]
13.85 0.8791
AT2G43235 unknown protein Potri.007G124600
[exp]
21.42 0.8991
AT5G36930 Disease resistance protein (TI... Potri.008G220200
[exp]
27.54 0.8659
AT1G34370 C2H2ZnF STOP1 sensitive to proton rhizotoxic... Potri.013G114600
[exp]
28.72 0.8651

Potri.002G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.