Plant FIBer expression Database

Potri.002G139200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02145 706 / 0 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
AT5G14850 50 / 4e-06 Alg9-like mannosyltransferase family (.1.2)
AT1G16900 42 / 0.0009 Alg9-like mannosyltransferase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019399
[exp]
696 / 0 AT1G02145 712 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10043256
[exp]
667 / 0 AT1G02145 669 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10033296
[exp]
50 / 3e-06 AT5G14850 697 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10033341
[exp]
48 / 2e-05 AT5G14850 701 / 0.0 Alg9-like mannosyltransferase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Potri.002G139200.3 pacid=42779867 polypeptide=Potri.002G139200.3.p locus=Potri.002G139200 ID=Potri.002G139200.3.v4.1 annot-version=v4.1
ATGGCGTCAAAATCCTCTCAATTCCTGCGTTCTTTTGGCTACGATCTACTCTTAGGATCAATAGCTGCTTTATACGTCTTCGCTGTACCCTACACTAAAG
TCGAGGAAAGCTTCAACATTCAGGCAATGCACGATATTCTTTACCACAGGCATCGCCTAGAAAATTATGATCATTTGGAGTTCCCGGGGGTCGTGCCTCG
CACTTTCATTGGAGCGTTGATTGTCTCGATTTTGGCGTCGCCAATTGTGGTGGTAATCAACTTGCTGCAGTTGTCGAAGATCAACGCTCTCATTGCAGTG
CGATTGGTGTTGGGTTGTGTGGTATTATCTACACTGAGGTTTTTCCGGATTCAGGTTAGACATAAGTTTGGTCATCAAGTAGAAGCTTTCTTTGTAATAT
TAACAGCACTTCAATTTCACATGCTGTTCTATTGCACACGTGCTCTTCCCAATATACTAGCTTTGGCTGTAGTTAACATGGGATATGCATATTGGTTCAG
AGGGAACTTCTACACAGCATTAAACTGTCTGGTTTTCGCCACAGTTGTATTTAGATGCGATATGCTGTTACTTCTTTGCCCTCTTGCTCTGGAGCTTTTG
TTGACCAAATCTATTTCATTGTGGGGAGCTATTAAATACTGCATTGGACCTGCGCTTCTGTCCATAGGTTTTACCATAATGGTTGATTCAATAATGTGGA
AGAGGATATTGTGGCCTGAATTTGAAGTTTTCTGGTTCAACTCTGTTCTCAATCGGAGTTCTGAGTGGGGTACACATTCCTTTCACTGGTATTTCACTTC
AGCTCTCCCCCGGTCATTGCTTGCTGCATATCCTCTTTTTCTGCTTGGGGTTTTGATTGACAGGAGGGTTCTAATCTTTGTGCTTCCAGTTTTCTCCTTC
ATTTTGCTTTACTCTAAGCTTCCACATAAGGAACTCCGGTTTATCATCAGCTCAGTTCCAATGCTGAACTTATCTGCAGCAGTTGCAGCTAACAGAATCT
ACAATAATAGGAAGAAGACACTATGGAAATTTCTGAATTTATTTATGCTGGGATTATTTTTTATCAGTCTAGGTTGCACTATAGTGTTTTTCTTGGCATC
CTATGACAATTATCCCAGTGGTAATGCATTAAAAGATTTGCACCAGATTGGCCATCTTAATAACACCAATGAACTGTGGGTTCACATTGATACTTTTTCA
GCCATGAATGGAATATCAAGGTTTTGTGAAAATGATTCACCATGGAGGTATTCCAAAGAAGAGGGGATTCCTCTGGAAGAATTTTGCAGGAGGAATTTTA
CTTATCTTGTGAGTGAACAGTTTGCTGTTGATGGATTCAAGTGCTTACATTATGTAAGTGGCTTCTCATGGGTTCGTCTTCAAAGTAGTCTTCCACCTGT
TATCCTGGTCAAGGAACCCAAGTTATATATTCATGGAAATACAAAAATCAAGGATATAATGCAAATAAATTGGGCAGGGTGCTCTTGA
AA sequence
>Potri.002G139200.3 pacid=42779867 polypeptide=Potri.002G139200.3.p locus=Potri.002G139200 ID=Potri.002G139200.3.v4.1 annot-version=v4.1
MASKSSQFLRSFGYDLLLGSIAALYVFAVPYTKVEESFNIQAMHDILYHRHRLENYDHLEFPGVVPRTFIGALIVSILASPIVVVINLLQLSKINALIAV
RLVLGCVVLSTLRFFRIQVRHKFGHQVEAFFVILTALQFHMLFYCTRALPNILALAVVNMGYAYWFRGNFYTALNCLVFATVVFRCDMLLLLCPLALELL
LTKSISLWGAIKYCIGPALLSIGFTIMVDSIMWKRILWPEFEVFWFNSVLNRSSEWGTHSFHWYFTSALPRSLLAAYPLFLLGVLIDRRVLIFVLPVFSF
ILLYSKLPHKELRFIISSVPMLNLSAAVAANRIYNNRKKTLWKFLNLFMLGLFFISLGCTIVFFLASYDNYPSGNALKDLHQIGHLNNTNELWVHIDTFS
AMNGISRFCENDSPWRYSKEEGIPLEEFCRRNFTYLVSEQFAVDGFKCLHYVSGFSWVRLQSSLPPVILVKEPKLYIHGNTKIKDIMQINWAGCS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
0 1
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.005G147700
[exp]
1.41 0.8984
AT1G29750 RKF1 receptor-like kinase in flower... Potri.011G072691
[exp]
2.00 0.8620
AT2G23093 Major facilitator superfamily ... Potri.007G052700
[exp]
3.74 0.8289
AT2G02910 Protein of unknown function (D... Potri.010G094000
[exp]
4.24 0.8450
AT1G45150 unknown protein Potri.014G180700
[exp]
5.19 0.8698
Potri.010G031250
[exp]
6.48 0.8525
AT1G55860 UPL1 ubiquitin-protein ligase 1 (.1... Potri.007G102500
[exp]
6.92 0.8150
AT5G07630 lipid transporters (.1) Potri.001G126200
[exp]
8.06 0.8618
AT3G09320 DHHC-type zinc finger family p... Potri.016G100200
[exp]
8.66 0.8144
AT5G11800 ATKEA6, KEA6 K+ efflux antiporter 6, ARABID... Potri.018G054100
[exp]
10.67 0.8599 ATKEA4.2

Potri.002G139200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.