Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02150 714 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 271 / 1e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 262 / 9e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G01990 257 / 4e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 256 / 5e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G27460 248 / 1e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21705 244 / 1e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 240 / 2e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 186 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 177 / 2e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050300 [exp] 985 / 0 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G208900 [exp] 307 / 2e-98 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G079600 [exp] 295 / 8e-94 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 290 / 9e-92 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 277 / 5e-87 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 273 / 4e-85 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 264 / 3e-82 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G119000 [exp] 262 / 6e-81 AT1G02370 456 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 259 / 6e-80 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009787 [exp] 670 / 0 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 662 / 0 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 293 / 1e-92 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 277 / 4e-87 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 271 / 4e-84 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033698 [exp] 270 / 6e-84 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003590 [exp] 249 / 4e-76 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 244 / 3e-74 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004173 [exp] 240 / 1e-73 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 240 / 8e-73 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G139400.1 pacid=42778808 polypeptide=Potri.002G139400.1.p locus=Potri.002G139400 ID=Potri.002G139400.1.v4.1 annot-version=v4.1 ATGCTCCTCCAACCTTCCCTTCACCACCACAAGGTCTCCCTCTCATCCACAATCTCCTACTCTCACCCTCTTCCATGGAAAAATCCCAACTTTACCCTGC ACCAGACAGTAAACTACAAGAAACTCCCAGTGATCACCTGCTCGATATCACAAATCCACAACTATGGAACAGTGGACTATGAGAGAAGACCAATGATGAA ATGGAATGCTATATACAGGAGGATTTCATTGATGGAGAATCCTGAATTGGGTTCTGGTAGTGTGTTGAATCAGTGGGAAAATGATGGAAAAAGGCTTACA AAATGGGAACTTTGTAGGGTTGTTAAGGAGTTGAGGAAGTATAAGAGGTACCAACAAGCTCTTGAGGTCTATGATTGGATGAACAATAGACAAGAGAGGT TTGGATTATCACCTAGTGATGCTGCGATTCAATTAGACCTTATTGCCAAAGTGCGGGGAGTTTCTAGCGCTGAAGATTTTTTCCTAAGGCTTCCCAACAC TTTCAAGGATAGGAGGATATATGGAGCTTTGCTGAATGCCTATGTGCGAAACAGAATGAGAGAAAAAGCAGAATCTTTGATTGATGAAATGAGAGGTAAA GATTATGTCACGCATGCACTTCCCTATAATGTGATGATGACTCTCTACATGAACATCAACGAGTACGATAAAGTTGACTTGATAATTTCAGAAATGAATG AGAAAAACATCAAGCTTGACATATATTCATATAATATCTGGTTATCATCTTGTGGATTACAAGGATCAGCTGATAAGATGGAACAGGTATTTGAGCAAAT GAAATCGGATGGATCCATCAATCCCAACTGGACAACTTTTAGCACGATGGCTACCATGTACATTAAGATGGGAAAGTTTGAAAAAGCTGAAGACTGCTTG AGGAGGGTTGAGAGTAGAATCACAGGTCGGGATCGGATACCTTATCACTATCTCCTTTCTCTATATGGTAATGTCGGTAACAAAGAAGAGGTTTATCGTG TATGGAATATTTACAAATCTATTTTTCCCAGTATTCCAAATTTGGGTTACCATGCTATGATCTCATCTCTGGTTCGGATGGATGACATTGAAGGGGCAGA AAAGATTTATGAGGAATGGCTATCCATTAAGACATCTTATGACCCAAGAATAGCAAATCTTTTTATGGCTGCTTTTGTTTATCAGGGAAATTTGGATAAA GCTGAGAGTTTTTTTGACCATATGCTTGAAGAAGGAGGAAAGCCAAATTCACATTCATGGGAAATTCTTGCTCAAGGGCATATTTCAGAAAGGAGAACGT CTGAGGCTTTGTCTTGCTTGAAAGAAGCTTTTGCTACTCCAGGATCAAAGAGTTGGAAGCCAAACCCTGCAAATGTATCTTCCTTCTTTAAGCTCTGTGA GGAAGAAGTTGACATGGCAAGCAAGGAAGCTTTAGCGAGTTTTTTGAGGCAGTCAGGACATCTAAAAGATAAAGCATATGCATTACTCCTAGGCATGCCT GTTACTGGTGATGAGCTATCAACAAAGGAAGAGAGAACTGAAGACCAGATTGACAATGAGGAAAATGATGGTGACAATGGGTCTGAAATGCTTGTCAGCC AATTGCAGGGTAGTCTGTGA
AA sequence Show only first row Show all	>Potri.002G139400.1 pacid=42778808 polypeptide=Potri.002G139400.1.p locus=Potri.002G139400 ID=Potri.002G139400.1.v4.1 annot-version=v4.1 MLLQPSLHHHKVSLSSTISYSHPLPWKNPNFTLHQTVNYKKLPVITCSISQIHNYGTVDYERRPMMKWNAIYRRISLMENPELGSGSVLNQWENDGKRLT KWELCRVVKELRKYKRYQQALEVYDWMNNRQERFGLSPSDAAIQLDLIAKVRGVSSAEDFFLRLPNTFKDRRIYGALLNAYVRNRMREKAESLIDEMRGK DYVTHALPYNVMMTLYMNINEYDKVDLIISEMNEKNIKLDIYSYNIWLSSCGLQGSADKMEQVFEQMKSDGSINPNWTTFSTMATMYIKMGKFEKAEDCL RRVESRITGRDRIPYHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYHAMISSLVRMDDIEGAEKIYEEWLSIKTSYDPRIANLFMAAFVYQGNLDK AESFFDHMLEEGGKPNSHSWEILAQGHISERRTSEALSCLKEAFATPGSKSWKPNPANVSSFFKLCEEEVDMASKEALASFLRQSGHLKDKAYALLLGMP VTGDELSTKEERTEDQIDNEENDGDNGSEMLVSQLQGSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.002G139400 [exp]	0	1
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	1.00	0.9877
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	1.73	0.9804
AT1G67660			Restriction endonuclease, type...		Potri.010G054800 [exp]	2.44	0.9844
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.006G092100 [exp]	2.82	0.9762
AT1G76730			NagB/RpiA/CoA transferase-like...		Potri.005G194800 [exp]	4.00	0.9704
AT1G80480		PTAC17	plastid transcriptionally acti...		Potri.003G030100 [exp]	4.89	0.9787
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	4.89	0.9776
AT2G47485			unknown protein		Potri.002G200000 [exp]	5.47	0.9748
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.005G105800 [exp]	7.34	0.9760
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	8.36	0.9709

Compare expression of checked genes

Potri.002G139400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.