Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44730 252 / 3e-81 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G24860 85 / 2e-18 Trihelix Homeodomain-like superfamily protein (.1) AT3G14180 76 / 6e-15 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G58630 72 / 8e-14 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 72 / 1e-13 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G54390 69 / 5e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G11100 63 / 4e-11 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 57 / 4e-09 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT1G54060 57 / 7e-09 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT4G17060 50 / 1e-06 FIP2 FRIGIDA interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G051200 [exp] 452 / 8e-160 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 122 / 6e-31 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G083800 [exp] 117 / 6e-29 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G243300 [exp] 106 / 3e-26 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.001G113600 [exp] 76 / 4e-15 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 75 / 6e-15 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.008G027000 [exp] 72 / 1e-13 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.003G195300 [exp] 71 / 2e-13 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 70 / 5e-13 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000963 [exp] 127 / 5e-33 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 125 / 2e-32 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10011020 [exp] 119 / 2e-30 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10022789 [exp] 94 / 8e-22 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10011851 [exp] 94 / 8e-22 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10020652 [exp] 76 / 2e-14 AT5G16860 344 / 2e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025404 [exp] 68 / 9e-13 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10013350 [exp] 62 / 4e-12 AT3G24860 70 / 1e-15 Homeodomain-like superfamily protein (.1) Lus10015282 [exp] 64 / 7e-12 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10008141 [exp] 66 / 2e-11 AT3G14180 271 / 3e-87 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G139500.1 pacid=42779484 polypeptide=Potri.002G139500.1.p locus=Potri.002G139500 ID=Potri.002G139500.1.v4.1 annot-version=v4.1 ATGTCCGCGCCAATCAAAACCGGATCGCCATCATCACCACAAGATCTGACCCCCCTCCAAACAACCGCTCAACAAACTCTCCCTGCACCGCCAACGCATC CATCCACCAACCCACGGCGTCTGCCTCCACCATGTTGGACCCCAGATGAAACCGTGGCCTTAATCGACGCTTACCGTGACAAATGGTACACGCTCCGCCG CGGTAATCTCAAAGCGAACCACTGGCAAGAAGTAGCTGATGCTGTAGCTCGCCGTTGTCCAGATGCTTCGCCACCAAAAACAGCTGTGCAGTGCCGCCAC AAGATGGAAAAGCTCCGGAAACGGTACCGGACCGAGATCCAAAGGGCTCGATCTATGCCGGTCTCGAGGTTTACGTCATCTTGGGTCCATTTTAAGAGAA TGGATGCGATGGAAAAGGGGCCTCAAGCTAAGGCTGATTATAATTCAGAGAGCGAAGGCGATGATAATGACGATGATAACGAGGATGATGGTGATATTCG TGGATCTTATTTAGAGAATTGTAGGAATGCTAAAAATTTTATGAATACGCGAAGTATTCAAAAGCTTTATGGAAATGGGATTGGGAATCCGGGGAATGGT GGCGATAATAATGGCTTGAGTGGCGGAAATTCTAGTTTGGGTTCGGGTAATGCTGGTGGATTTCGAATTAGAATACCGACAGGAGTTAGCGTAGCGCAGC CGGGACCTAAATTTTATGCCAAAACAGAGCAGAAGCATGGTGGGAGTCCTAATATGGGTGTTAATGCGAGCCCAGACCCCTACCCGAAGCCTAAATATGG AGGTGGGGTGGGGACTAGTAGTAGGGTTATGAGGGGGAGTGAGGAAATGGGGAGGAAAAGGGAAAGGGAGCCGATGGAGGAGTTGGTTGCAGCGGTAAAG GTATTGGGAGATGGGTTTGTTAGAATGGAGCAAATGAAGATGGAAATGGCTAGAGAGATGGAGACAATGAGGATGGAAATGGAGATGAAGCGAACGGAGA TGATTCTGGATTCGCAACAGAGGATTGTTGAAGCTTTTGCTAAAGCTTTATCAGAGAAGAAGAAGAGGCCTAAGAGAATGCCCTCACCTGAGTCATAG
AA sequence Show only first row Show all	>Potri.002G139500.1 pacid=42779484 polypeptide=Potri.002G139500.1.p locus=Potri.002G139500 ID=Potri.002G139500.1.v4.1 annot-version=v4.1 MSAPIKTGSPSSPQDLTPLQTTAQQTLPAPPTHPSTNPRRLPPPCWTPDETVALIDAYRDKWYTLRRGNLKANHWQEVADAVARRCPDASPPKTAVQCRH KMEKLRKRYRTEIQRARSMPVSRFTSSWVHFKRMDAMEKGPQAKADYNSESEGDDNDDDNEDDGDIRGSYLENCRNAKNFMNTRSIQKLYGNGIGNPGNG GDNNGLSGGNSSLGSGNAGGFRIRIPTGVSVAQPGPKFYAKTEQKHGGSPNMGVNASPDPYPKPKYGGGVGTSSRVMRGSEEMGRKREREPMEELVAAVK VLGDGFVRMEQMKMEMAREMETMRMEMEMKRTEMILDSQQRIVEAFAKALSEKKKRPKRMPSPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.002G139500 [exp]	0	1
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.005G180800 [exp]	1.00	0.9354	CHB904,CHB4.1
AT5G14610			DEAD box RNA helicase family p...		Potri.001G347100 [exp]	5.47	0.8634
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	5.74	0.8953
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	6.32	0.8890
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	7.48	0.8830
AT2G24960			unknown protein		Potri.006G265900 [exp]	7.54	0.8566
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	8.12	0.8954
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	9.16	0.8850	Pt-VCS.1
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.007G009700 [exp]	9.32	0.8496
AT1G14740			Protein of unknown function (D...		Potri.010G102600 [exp]	9.59	0.8225

Compare expression of checked genes

Potri.002G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.