Plant FIBer expression Database

Potri.002G139600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17070 404 / 4e-142 peptidyl-prolyl cis-trans isomerases (.1)
AT4G33380 46 / 2e-05 unknown protein
AT1G01940 44 / 2e-05 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
AT5G67530 45 / 6e-05 ATPUB49 plant U-box 49 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G051300
[exp]
572 / 0 AT4G17070 436 / 4e-154 peptidyl-prolyl cis-trans isomerases (.1)
Potri.003G083900
[exp]
437 / 4e-155 AT4G17070 484 / 3e-173 peptidyl-prolyl cis-trans isomerases (.1)
Potri.001G150300
[exp]
428 / 1e-151 AT4G17070 475 / 1e-169 peptidyl-prolyl cis-trans isomerases (.1)
Potri.002G127700
[exp]
47 / 7e-06 AT4G33380 300 / 8e-101 unknown protein
Potri.014G071600
[exp]
45 / 1e-05 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Potri.014G031900
[exp]
45 / 2e-05 AT4G33380 331 / 3e-113 unknown protein
Potri.002G149700
[exp]
44 / 2e-05 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036745
[exp]
288 / 3e-98 AT4G17070 298 / 6e-102 peptidyl-prolyl cis-trans isomerases (.1)
Lus10037182
[exp]
288 / 1e-97 AT4G17070 306 / 3e-104 peptidyl-prolyl cis-trans isomerases (.1)
Lus10009237
[exp]
46 / 1e-05 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G139600.1 pacid=42779896 polypeptide=Potri.002G139600.1.p locus=Potri.002G139600 ID=Potri.002G139600.1.v4.1 annot-version=v4.1
ATGGGTACAATCTCCTGTTGCATGGTCTACCTATGTTTCTCAGCACTGTTTAGACCACCTATTAATAGTACAGAGTTTTTGGACTCAAGAGTTAGCGATG
ATTTGAAGCGTGAAGATAGAAATGGAGATTGTTGTAGAGGGATTGAACATTTGGAGCTATGGGGAGATGCTGTTAAATGGGGTTCTGAATATAAAGTCAA
TTCTTCTAAAGATTGTTGCTTGGCTTGTAAAGGAATGTGCAGTGATGATAGCGGGCCTTGTTTGTGTGATTCTTGGGTGTTTTGTGGAGATAAACTGGCT
TGTGGTGATCAATTTGGTGAGTGTTGGCTGAAGAAACAGAAGGATACCTTGGAGCCTGAAAAGCGAGACTCAGGAGATCATGTTGTGTGGACTTCTGGAG
TTGTTTTTGGGAGAGGAGAGCAGGGCATTGTTGGATTTGAAACGCGATACGGGACATTTCATGTAAAACTATTACCTGATTGTGCCCCACATTCTATTTC
GTATATTCTTGAGTTGTTGGCATCACGCCATTGTGTGGGCTGCCACTTTTACCGTGCAGAAAGCAGGGGAAAGTCTTGGGATCCAGAAGGAAATCATATT
GAACATGCTCCATACGGCCCTCCATTTGCACTAATTCAAGGGACTCTTGGATCCTATGGGACAGTATTTAAGGATATTCCAACAGAGGCTTTCCCTACCA
TTAGAAGAGGTTCGGTTGCATGGGTTGATTCTGGTCCAGAATTCTTCATCAGTTTAGCTAACCACAATGAGTGGAATAAGGCATATACAGTGTTTGGTTT
CGTTCTTACTGAAGATATGGAGATCATAGAGAGAATTGCACAGCTCCCAGCCAAGCCAGAAGTGTGGAGTAATATTAATGTTGCTGTCTTGGAAAATCCT
GTCCCATTACATGTCCGAAGAATCAAGAGAAGTGTCGGAAACTTAAAACTTTAA
AA sequence
>Potri.002G139600.1 pacid=42779896 polypeptide=Potri.002G139600.1.p locus=Potri.002G139600 ID=Potri.002G139600.1.v4.1 annot-version=v4.1
MGTISCCMVYLCFSALFRPPINSTEFLDSRVSDDLKREDRNGDCCRGIEHLELWGDAVKWGSEYKVNSSKDCCLACKGMCSDDSGPCLCDSWVFCGDKLA
CGDQFGECWLKKQKDTLEPEKRDSGDHVVWTSGVVFGRGEQGIVGFETRYGTFHVKLLPDCAPHSISYILELLASRHCVGCHFYRAESRGKSWDPEGNHI
EHAPYGPPFALIQGTLGSYGTVFKDIPTEAFPTIRRGSVAWVDSGPEFFISLANHNEWNKAYTVFGFVLTEDMEIIERIAQLPAKPEVWSNINVAVLENP
VPLHVRRIKRSVGNLKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G17070 peptidyl-prolyl cis-trans isom... Potri.002G139600
[exp]
0 1
Potri.006G273733
[exp]
4.24 0.8694
AT4G19645 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.002G056600
[exp]
4.47 0.8635
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Potri.001G255900
[exp]
5.56 0.9074
AT3G61420 BSD domain (BTF2-like transcri... Potri.005G061366
[exp]
7.74 0.8751
AT5G17260 NAC ANAC086 NAC domain containing protein ... Potri.012G023900
[exp]
10.09 0.8516
AT1G03160 FZL FZO-like (.1.2) Potri.002G053366
[exp]
10.39 0.8189
AT5G04040 SDP1 SUGAR-DEPENDENT1, Patatin-like... Potri.016G041000
[exp]
11.26 0.7648
AT5G49570 ATPNG1 peptide-N-glycanase 1 (.1) Potri.013G039600
[exp]
11.83 0.8355
AT1G30760 FAD-binding Berberine family p... Potri.011G161400
[exp]
19.05 0.8409
AT3G45430 Concanavalin A-like lectin pro... Potri.009G035601
[exp]
22.27 0.8016

Potri.002G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.