Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44710 585 / 0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 131 / 4e-32 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 117 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G16280 79 / 6e-15 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT3G16380 76 / 4e-14 PAB6 poly(A) binding protein 6 (.1) AT2G47310 76 / 5e-14 flowering time control protein-related / FCA gamma-related (.1) AT1G71770 73 / 4e-13 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT3G13224 71 / 6e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G11650 69 / 5e-12 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G36660 66 / 7e-11 PAB7 poly(A) binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G051500 [exp] 847 / 0 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G116400 [exp] 365 / 5e-114 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 358 / 1e-111 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G212400 [exp] 152 / 4e-39 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G079200 [exp] 149 / 2e-38 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 139 / 6e-35 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 139 / 7e-35 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 125 / 4e-30 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.002G178200 [exp] 123 / 2e-29 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028162 [exp] 691 / 0 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 331 / 5e-102 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033990 [exp] 328 / 1e-98 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10021351 [exp] 138 / 2e-34 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 130 / 3e-32 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043390 [exp] 130 / 6e-32 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10002689 [exp] 129 / 2e-31 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10030207 [exp] 126 / 2e-30 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10017026 [exp] 94 / 5e-20 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10029574 [exp] 87 / 4e-17 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G139700.2 pacid=42778118 polypeptide=Potri.002G139700.2.p locus=Potri.002G139700 ID=Potri.002G139700.2.v4.1 annot-version=v4.1 ATGCCTCCACGGGCGGTAAAGAGAGGAGCGGCGGCTGGGAAGAAGAGAACGTTGAGGAAGGTGCTGAGTCAGCAACATCCGGAAGCGGCGGAGGATGTGT TGAATTTGGAGGTGAAACCGACGGTGGTTGATGAGAAGCCCGTGGTCGTGGAGGAGGAGAAGAGCGTGTTTGTTGAAGATAAGTTAGTTATTGATGAGAA GAAAGATAGAGAAGGTGAGATTGAAGCGAATTTGGTCGCCAATGGACCGGCTTCTTTGAAAAAAGAAGAAGAGGGCAAGGAATCTGTAGATGAGTATGAA AAAGATGAGAGGTTAGATTTTGATGATAATGAGCCTGAATATGAACCTGAAGAATATGGTGGGGTGGATTATGATGATAAGGAAATTGAACAGGAGGATG TTCAGGAGGTGGAAGATGAAGTGGAGGAAGAAAATGAGGAGGAGAATGTTGGTGAAGAGGAACAGGGTGATTTAGTAGAGGAGGAATTGGAAGAGGATCC TGAAGAACATGAGGGTGAAGAGGATGATGAGCATGCTGGTGAGGAGGTAGAGCATGCTGAAATGGCTGATGTGGAGGAAGAGGACGAGCATCATGAAGTG TTCAAGGAGAGGCGCAAGCGGAAGGAGTTTGAAGTATTTGTTGGGGGTTTAGACAAGGATGCTACTGAGGATGATCTTCGGAAAATATTCAGCCGTGTTG GTGAGGTTACTGAAGTCAGGCTGATGATGAACCCCCAGACTAAGAAAAACAAAGGGTTTGCGTTCTTACGCTTTGCAACTGTTGAACAGGCAAAACGAGC TGTGACAGAACTCAAAAACCCAGTGATCAATGGGAAACAATGCGGTGTTACTCCAAGTCAGGACAGTGACACCCTTTTTCTGGGTAACATTTGCAAGACA TGGACTAAGGAAGCTTTGAAAGAGAAGTTGAAACATTATGGAGTTGAGAATGTTAAGGATTTGACCCTGGTAGAAGATAGCAACAACGCGGGAATGAACC GGGGATTTGCGTTTCTTGAATTTTCTTCTCGTTCAGATGCCATGGATGCTTTTAAGCGTCTTCAGAAGAGAGATGTTTTATTTGGAGTTGATAGGCCTGC AAAGGTGTCTTTTGCAGATTCCTTCATTGACCCTGGTGATGAAATCATGGCACAGGTGAAGACTGTGTTTATTGATGGCCTGCCTGCCTCATGGGATGAG GATCGTGTTCGGGTACTTTTGAAGAAATATGGAGAGATCGAAAAGATTGAGCTTGCACGGAATATGCCATCTGCCAGGAGAAAGGATTTTGGTTTTGTTA CCTTTGATACTCATGATGCTGCAGTGACATGTGCTAAAAGTATAAACAATGCAGAGTTGGGTGAAGGAGACAACAAGGCTAAAGTTAGGGCCCGCTTATC AAGACCCCTTCAGAGGGGAAAAGGAAAGCATCTAAGTCGTGGAGATTTCCGACCTGGGTATGGAGCTAGTAGAGTTGTCAAGGGTCCATGGGTTCGTCCT GTGCCGCATAGCTACTCTACTCGTCCAGTAAGAGGAATTGCAACTCGTGCTCCACCTTTCAGTCTAAAGAGTTCTACAGGATTGAGAGAGAGACGTCCTC CCGTGATGTCCATGCCAGCAAGAAGCAGACCTTTGGCTCCGCCTTCTAGGTCCTTTGAGAGAAGACCACCTCCTCCATCTTACGCGAAGAGCTTGAAGAG GGAATATGGTCGGCGTGATGAGCCTCCTCCTTCAAGGAGCAGACCTGCTGTAGATTATGATCCTAGGTCTATCCCTGAGAGACGCCCATCTTATAGAGAT GAATATTCTTCTCGTGGTACCAGCTACGCTGATCTTCCCAGAAGTACTTCTCGCATGTCTGCAAGGAGAGCTTATGCCGATGATGGCTATAGTCAAAGGT ACGAGAGGCCTCCTCCAAATTACCGTGAAGGGCATGGCCGTGATTATGATTCTGTTGCTGGTTCAAAACGTCCATATCCGGCTATGGATGATATTCCTCC TCGTTATGCTGATGCTGGTGTGCGCCATTCGAGGCCTCGTTTGGACTATGAACTTGGTTCTAGTGCTTCTCAATATGGGGATGCATATGGTGATAGACTT GGGAGATCTGCTGCTGGATATGGGGGCAGCAGAAGTTCTATTTCCAGTCAGGATTCACATGGGATGTATAGTAGCCGTCAGGGTATGGGTTATGGAGGTT CTTATGGAGGCAATGATGGTGGAATGTACTCATCAAGCTATGGCGGTGATTACATGTCTCGCAGTGGTGATGTTGGTGGTAGCTCTTACTCGTCAATGTA CTCGAGTCGTGGAGGCATGGGCAGCAGCAGCAGCTACATGGGTACTGGTAGCTCAGGATCATACTATTAG
AA sequence Show only first row Show all	>Potri.002G139700.2 pacid=42778118 polypeptide=Potri.002G139700.2.p locus=Potri.002G139700 ID=Potri.002G139700.2.v4.1 annot-version=v4.1 MPPRAVKRGAAAGKKRTLRKVLSQQHPEAAEDVLNLEVKPTVVDEKPVVVEEEKSVFVEDKLVIDEKKDREGEIEANLVANGPASLKKEEEGKESVDEYE KDERLDFDDNEPEYEPEEYGGVDYDDKEIEQEDVQEVEDEVEEENEEENVGEEEQGDLVEEELEEDPEEHEGEEDDEHAGEEVEHAEMADVEEEDEHHEV FKERRKRKEFEVFVGGLDKDATEDDLRKIFSRVGEVTEVRLMMNPQTKKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKT WTKEALKEKLKHYGVENVKDLTLVEDSNNAGMNRGFAFLEFSSRSDAMDAFKRLQKRDVLFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPASWDE DRVRVLLKKYGEIEKIELARNMPSARRKDFGFVTFDTHDAAVTCAKSINNAELGEGDNKAKVRARLSRPLQRGKGKHLSRGDFRPGYGASRVVKGPWVRP VPHSYSTRPVRGIATRAPPFSLKSSTGLRERRPPVMSMPARSRPLAPPSRSFERRPPPPSYAKSLKREYGRRDEPPPSRSRPAVDYDPRSIPERRPSYRD EYSSRGTSYADLPRSTSRMSARRAYADDGYSQRYERPPPNYREGHGRDYDSVAGSKRPYPAMDDIPPRYADAGVRHSRPRLDYELGSSASQYGDAYGDRL GRSAAGYGGSRSSISSQDSHGMYSSRQGMGYGGSYGGNDGGMYSSSYGGDYMSRSGDVGGSSYSSMYSSRGGMGSSSSYMGTGSSGSYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.002G139700 [exp]	0	1
AT3G49730			Tetratricopeptide repeat (TPR)...		Potri.002G176100 [exp]	2.00	0.7914
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	3.00	0.7858
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.016G023800 [exp]	3.16	0.7934
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Potri.006G218900 [exp]	5.19	0.7526
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.005G124700 [exp]	8.36	0.7681
AT5G22450			unknown protein		Potri.009G164400 [exp]	10.39	0.7633
AT5G64270			splicing factor, putative (.1)		Potri.001G310900 [exp]	10.48	0.7454
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	14.56	0.7748
AT3G50690			Leucine-rich repeat (LRR) fami...		Potri.007G027500 [exp]	19.44	0.7532
AT5G08450			unknown protein		Potri.018G145560 [exp]	20.71	0.7418

Compare expression of checked genes

Potri.002G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.