Plant FIBer expression Database

CKB3.2 (Potri.002G139900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol CKB3.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44680 418 / 1e-148 CKB4 casein kinase II beta subunit 4 (.1.2)
AT5G47080 402 / 2e-142 CKB1 casein kinase II beta chain 1 (.1.2.3.4)
AT4G17640 389 / 4e-137 CKB2 casein kinase II beta chain 2 (.1.2)
AT3G60250 384 / 2e-135 CKB3 casein kinase II beta chain 3 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G052100
[exp]
510 / 0 AT2G44680 423 / 1e-150 casein kinase II beta subunit 4 (.1.2)
Potri.001G149600
[exp]
380 / 1e-133 AT5G47080 390 / 7e-138 casein kinase II beta chain 1 (.1.2.3.4)
Potri.003G084900
[exp]
362 / 1e-126 AT4G17640 377 / 7e-133 casein kinase II beta chain 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028161
[exp]
456 / 2e-163 AT2G44680 454 / 5e-163 casein kinase II beta subunit 4 (.1.2)
Lus10028160
[exp]
454 / 1e-162 AT2G44680 455 / 2e-163 casein kinase II beta subunit 4 (.1.2)
Lus10042861
[exp]
449 / 1e-160 AT2G44680 447 / 2e-160 casein kinase II beta subunit 4 (.1.2)
Lus10042859
[exp]
440 / 4e-157 AT2G44680 451 / 3e-162 casein kinase II beta subunit 4 (.1.2)
Lus10028159
[exp]
439 / 6e-157 AT2G44680 449 / 2e-161 casein kinase II beta subunit 4 (.1.2)
Lus10042860
[exp]
386 / 1e-136 AT5G47080 414 / 2e-148 casein kinase II beta chain 1 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01214 CK_II_beta Casein kinase II regulatory subunit
Representative CDS sequence
>Potri.002G139900.6 pacid=42779122 polypeptide=Potri.002G139900.6.p locus=Potri.002G139900 ID=Potri.002G139900.6.v4.1 annot-version=v4.1
ATGTACAAAGATCGAGGCGGGTTTGGTGGCGGGTCATCAAGATCGGATATTGTAGGAGGACCGCTTGATCGAAAGCGTATAAATGATGCGCTAGACAAGC
ATCTAGAGAAGTCTTCTCCTTCAACTTCGAGAGGATTGAATAATAGTAGTAAGGATAAGGAGAGATTATCTGTTCCTTCTACTTCTACCGGTAAATCATT
ACAGCACCATCAGCAGCAGCTTGATCATCATCGTGCTGATTCTCGCTCCGCTTCGCTTTCCAAAAACAAATGCTCTGATGAGGAATCTGAGACAGACAGT
GAGGAGTCGGATGTTAGTGGTTCTGATGGAGATGACACATCTTGGATCTCGTGGTTTTGCAATTTGCGAGGAAATGAATTTTTCTGTGAAGTTGATGATG
AGTACATTCAGGATGATTTTAATCTTTGTGGACTGAGCAGTCAAGTTCCATACTATGATTATGCACTTGATCTTATATTGGATGTTGAATCTTCTCATGG
TGATATGTTCACTGAAGAACAGAATGAGTTGGTGGAATCTGCAGCAGAGATGCTTTACGGTCTTATTCATGTGCGTTACATACTTACTAGCAAGGGGATG
TCTGCCATGTTGGAGAAGTACAAAAACTATGACTTTGGGAGATGCCCACGAGTTTATTGCTGTGGACAGCCCTGCTTCCCAGTTGGTCAATCAGACATTC
CTCGTTCAAGTACTGTCAAAATCTACTGTCCAAAATGTGAAGACATCTATTACCCTCGATCCAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGAAC
AACATTTCCTCACCTATTTTTGATGACATATGGTCACCTAAAGCCACAGAAGGCAACACAGAGTTACGTCCCAAGAGTTTTTGGCTTCAAACTCCACAAA
CCTTGA
AA sequence
>Potri.002G139900.6 pacid=42779122 polypeptide=Potri.002G139900.6.p locus=Potri.002G139900 ID=Potri.002G139900.6.v4.1 annot-version=v4.1
MYKDRGGFGGGSSRSDIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLDHHRADSRSASLSKNKCSDEESETDS
EESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGM
SAMLEKYKNYDFGRCPRVYCCGQPCFPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKPQKATQSYVPRVFGFKLHK
P

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44680 CKB4 casein kinase II beta subunit... Potri.002G139900
[exp]
0 1 CKB3.2
AT3G13340 Transducin/WD40 repeat-like su... Potri.006G000500
[exp]
1.41 0.6819
AT4G16180 unknown protein Potri.010G146800
[exp]
8.06 0.6859
AT1G53200 unknown protein Potri.012G106300
[exp]
17.60 0.6157
AT4G00090 Transducin/WD40 repeat-like su... Potri.014G069400
[exp]
27.05 0.6512
AT4G28540 CKL6, PAPK1 casein kinase I-like 6 (.1) Potri.005G226900
[exp]
29.88 0.5606
AT3G54190 Transducin/WD40 repeat-like su... Potri.013G091600
[exp]
39.68 0.5978
AT3G20290 ATEHD1 EPS15 homology domain 1 (.1.2) Potri.001G356300
[exp]
41.42 0.6312
AT5G27540 MIRO1, EMB2473 embryo defective 2473, MIRO-re... Potri.013G023100
[exp]
50.91 0.5916
AT1G10240 FAR1_related FRS11 FAR1-related sequence 11 (.1) Potri.002G199300
[exp]
54.66 0.5694
AT5G38380 unknown protein Potri.017G115200
[exp]
65.45 0.5459

Potri.002G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.