Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17080 374 / 3e-125 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT2G35170 345 / 3e-114 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21920 278 / 9e-89 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G77660 257 / 1e-80 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G21980 91 / 3e-19 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 89 / 1e-18 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G60890 89 / 2e-18 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT3G56960 87 / 5e-18 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 85 / 3e-17 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT1G10900 83 / 1e-16 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052300 [exp] 615 / 0 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G085000 [exp] 402 / 2e-135 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 388 / 3e-130 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.002G085900 [exp] 265 / 2e-83 AT1G21920 396 / 7e-136 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.005G175800 [exp] 264 / 2e-83 AT1G21920 372 / 3e-126 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.016G036800 [exp] 90 / 8e-19 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.002G088100 [exp] 89 / 2e-18 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 87 / 5e-18 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G211200 [exp] 87 / 8e-18 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028158 [exp] 452 / 3e-155 AT4G17080 508 / 1e-176 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10042858 [exp] 409 / 1e-138 AT4G17080 439 / 3e-150 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10028062 [exp] 267 / 3e-84 AT1G77660 442 / 2e-153 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10008325 [exp] 257 / 5e-80 AT1G77660 438 / 8e-152 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Lus10018200 [exp] 94 / 6e-20 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 94 / 7e-20 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10029661 [exp] 92 / 1e-19 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10015456 [exp] 84 / 8e-17 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10027306 [exp] 80 / 2e-15 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 79 / 2e-15 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.002G140000.1 pacid=42778072 polypeptide=Potri.002G140000.1.p locus=Potri.002G140000 ID=Potri.002G140000.1.v4.1 annot-version=v4.1 ATGCATCAGAAGAAATCAGAAATCCAAATCGGAAAAGAAAGCACCGGCATCTCTTCCGATTTCTCAACTACGTTAAACCCGCAATTTCTCATCCTCCACC ACTTCCAACAACAAAATGACCCAATTACCCCTCCTTCTCCTCCCTGTTCTTCCCCAACTCCTTACAAAAGACCTCTCTTAACGACCACGACCACGACCAC AACCCCTCATAGCCAAACCCCTCATCGTTCCAATTCACTCTCTAAATCCCCTACTATTTACCATTTTTCCACGACCCATCAACCCCAGTCTCTCTTTTCC GTCTCCACTGCCGTTAAAGCTGCCGCCTTTCGATTTCTCTGCCCCCGTTTGGCTCGCCTGAAAGTGCACCTCCGCTTGATTCTCTTGCTCTCGCTTCCCT TCTTTTATTTCCTGGTTTCGCATCCGAGTCATTCGTTTTTGCTTGATTTTTTATCTGCTTTTGCATTTTCTGCTGCTTTGTTATTGTCTCTTAATTTAGC TTTGCCTAGATTGCCTTCAATTCGACTGTTTTTATCGCGGTCATTTGCCATTAATAAGCTTAGGAACTCAGCATCCAGACATCCTTTACCGGTGTTTTGG TCAATTGGATCGAAGCCAAAACCGGAGAAAAGGGCGACTTCGGGTTGTTTTGTTCAGGATTATAGTAACGGAGACGTTTATGAAGGTGAATTTCATAAGG GAAAGTGTTCAGGAAGTGGGGTTTATTATTATTATATGAGTGGAAGATATGAAGGTGATTGGATTGATGGGAAATACGATGGCTATGGAGTGGAAACTTG GGCTAGAGGGAGTCGGTATCGAGGGCAATATAGGCAAGGACTTAGACATGGATTTGGGGTGTATAGGTTTTATACAGGAGATGTTTATGCCGGTGAATGG TCTAATGGACAAAGTCATGGTTGTGGAGTTCATACTTGTGAGGACGGGAGTCGGTATGTTGGTGAATTCAAGTGGGGTGTCAAGCACGGACTCGGGCATT ACCATTTCAGAAATGGGGATACATATGCTGGAGAATATTTTGCCGACAAGATGCATGGCTTTGGTGTCTATCGTTTTGCAAATGGGCATCGGTATGAGGG AGCCTGGCATGAGGGTAGAAGGCAAGGCCTGGGAATGTACACATTCAGAAATGGGGAGACTCAGTCTGGTCACTGGCAAAATGGAATTCTTGATGTCCCA AGCACGCAGAACACCTCTCATCCTGTATCTCCGGTTGCTGTTTATCATTCCAAAGTACTCAATGCAGTGCAGGAAGCAAGACGGGCAGCGGAAAAGGCTT ATGATGTTGCAAAAGTTGATGAAAGAGTGAATAGGGCAGTAGCAGCAGCTAACAGAGCAGCTAATGCAGCTAGAGTGGCAGCAGTTAAAGCTGTTCAGAA ACAAATGCATCATAACAGTAACAATGATAACATTCCGATTCCATTTGTGTGA
AA sequence Show only first row Show all	>Potri.002G140000.1 pacid=42778072 polypeptide=Potri.002G140000.1.p locus=Potri.002G140000 ID=Potri.002G140000.1.v4.1 annot-version=v4.1 MHQKKSEIQIGKESTGISSDFSTTLNPQFLILHHFQQQNDPITPPSPPCSSPTPYKRPLLTTTTTTTTPHSQTPHRSNSLSKSPTIYHFSTTHQPQSLFS VSTAVKAAAFRFLCPRLARLKVHLRLILLLSLPFFYFLVSHPSHSFLLDFLSAFAFSAALLLSLNLALPRLPSIRLFLSRSFAINKLRNSASRHPLPVFW SIGSKPKPEKRATSGCFVQDYSNGDVYEGEFHKGKCSGSGVYYYYMSGRYEGDWIDGKYDGYGVETWARGSRYRGQYRQGLRHGFGVYRFYTGDVYAGEW SNGQSHGCGVHTCEDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADKMHGFGVYRFANGHRYEGAWHEGRRQGLGMYTFRNGETQSGHWQNGILDVP STQNTSHPVSPVAVYHSKVLNAVQEARRAAEKAYDVAKVDERVNRAVAAANRAANAARVAAVKAVQKQMHHNSNNDNIPIPFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17080			Histone H3 K4-specific methylt...		Potri.002G140000 [exp]	0	1
AT1G20110			RING/FYVE/PHD zinc finger supe...		Potri.002G018900 [exp]	6.32	0.8670
AT1G79090			unknown protein		Potri.001G457800 [exp]	7.07	0.8639
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	11.18	0.8934
AT1G21700		CHB4, ATSWI3C	SWITCH/sucrose nonfermenting 3...		Potri.002G080600 [exp]	13.03	0.8853
AT3G19895			RING/U-box superfamily protein...		Potri.010G171100 [exp]	14.83	0.8656
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	15.00	0.8899
AT5G04670			Enhancer of polycomb-like tran...		Potri.010G235900 [exp]	16.37	0.8053
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Potri.008G149900 [exp]	16.97	0.8839
					Potri.019G129780 [exp]	17.20	0.8902
AT3G26850			histone-lysine N-methyltransfe...		Potri.018G051900 [exp]	19.05	0.8563

Compare expression of checked genes

Potri.002G140000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.