Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45290 121 / 2e-29 RING/U-box superfamily protein (.1.2) AT4G09560 70 / 1e-12 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G30400 69 / 2e-12 RING/U-box superfamily protein (.1) AT1G71980 69 / 2e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35625 66 / 2e-12 RING/U-box superfamily protein (.1) AT1G72220 69 / 3e-12 RING/U-box superfamily protein (.1) AT1G22670 69 / 3e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT2G46160 66 / 3e-12 RING/U-box superfamily protein (.1) AT3G18930 68 / 5e-12 RING/U-box superfamily protein (.1.2) AT1G35630 67 / 5e-12 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G053500 [exp] 551 / 0 AT5G45290 134 / 4e-34 RING/U-box superfamily protein (.1.2) Potri.006G190500 [exp] 250 / 6e-77 AT5G45290 150 / 3e-39 RING/U-box superfamily protein (.1.2) Potri.018G114700 [exp] 219 / 1e-64 AT5G45290 131 / 2e-32 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 128 / 1e-31 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.001G127100 [exp] 127 / 3e-31 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.006G201500 [exp] 67 / 5e-13 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.009G110000 [exp] 70 / 9e-13 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.013G073500 [exp] 69 / 1e-12 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.010G235200 [exp] 68 / 1e-12 AT1G20823 80 / 3e-18 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001683 [exp] 228 / 1e-68 AT5G45290 155 / 4e-41 RING/U-box superfamily protein (.1.2) Lus10030117 [exp] 227 / 6e-68 AT5G45290 155 / 5e-41 RING/U-box superfamily protein (.1.2) Lus10035680 [exp] 104 / 8e-24 AT5G45290 343 / 1e-111 RING/U-box superfamily protein (.1.2) Lus10043426 [exp] 71 / 1e-13 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034157 [exp] 70 / 2e-13 AT4G40070 84 / 7e-19 RING/U-box superfamily protein (.1) Lus10009438 [exp] 70 / 2e-12 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10013618 [exp] 68 / 3e-12 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10006074 [exp] 68 / 6e-12 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041079 [exp] 64 / 2e-11 AT3G61550 239 / 1e-80 RING/U-box superfamily protein (.1) Lus10033515 [exp] 64 / 2e-11 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G140500.4 pacid=42778748 polypeptide=Potri.002G140500.4.p locus=Potri.002G140500 ID=Potri.002G140500.4.v4.1 annot-version=v4.1 ATGGGTTCAAGCAGCAGCAGGTTAAATGGGTCAACCCCATCTGGGTCAGGGACTAACAGTTTCAAGCGCAGAGCCCTTGCTTCTGTCTTTTGTGGTGGTT CTGCTTCTCAGTCTCCTATTGAGATGGGTGATCATATGGATGAATCGTTGGCAGGATCTCTTGAAAATTTAGCTACTTTTCATGATGTGTCAGCAAGCTC CAAGCAGGCCTCATCTTCTAACTTTGGTTTGGAAACTGGGTTAAGTAGTTCCAGTGCTGAAAGTGGGGACTTATCTGGAAGTAGTAATGGTAATGTTGAG GATACTTCTGCTTTTAAAAATAGCGAGTCACAATCTCAGCAGGTGAATATCAGTGGCAGTACTATGGAAGCCCATGCAGTGAATGCTTCTGTAAAAGAAC AGACACCAACAGCATCTGCCTCTGATGATACAGCAGTGGCAGGCGTTGTGGGTCAGGATTCTGGGAACCTGGATTCAAATGGGGAGTCCATTTCAGATGC AAATATGGATTTGTCTAATACAAATTCTGTTATTCCTGCTTCCTTATCTCCACAACCATGTCCAGAATTTCTCTCATCTGACAGGGAACGAGAAGCAAGA GCTGCAAGAGTGCTTCTTGTTGATGTGGTGAACATACATTCCAACATTTTGTCAATTAGCTTTGAAGAAATTAGTAACCGTGAGGCAAGAAGAAATAGTA GAAGGATGTTTTGGGATGCTTTCTCAAGAAGCAATTTGAGAAGGAATAGGGATTCCCCAACCATAGTTTTTACATCTAGTCATGCTGATGATCTAGGATC TCACGACAGATGGCTCCTTGATTTTGGTGGCGATCTACATTTGGATGGAGTTGGTCGTGAATCTAGATATCCTGGCACTAGAAGTCATCACAGGAGTGAA CGACGATGGCAATCAAGGAGAGAAACATTTCATGATGTACGTGATGAGCTAGGTTGGGAAACTTCCTTGTGTCCAGCTGGGCTTCATCCTAATGGTACAT GCTCATGTGAATCCTCTTCTGTGGCTGTCGAGTCCAGCAGCCATGCAAGTATTTCACAAATAATTCTGCTGGCAGATGCACTTTTTGAGGTTTTAGAGGA AATCCATCACCATCGCCTGTCCCTATCACCTTCCATGCTCTCACTTCCTGCTCCGGAAGCTGTTGTAAATTCATTTCCTCTGAAGAATTATAAAAAGTTC CAGGGAACTGAAAATGTGGCACAGCATGAACAACAGTGTCACATTTGCTTGGTTGACTACGAGGAAGGAGATAAAATTCGAGTTCTCCCATGTTCTCATG AATATCACATGTCATGTGTTGACAAATGGCTCAAGGAAATACATGGTGTATGCCCTCTCTGCAGAGACGGTGTTTGCAAGGGAAATGTTGAAAGTCCAGC CTCAAACCCAGAGATCACATCACTTTGA
AA sequence Show only first row Show all	>Potri.002G140500.4 pacid=42778748 polypeptide=Potri.002G140500.4.p locus=Potri.002G140500 ID=Potri.002G140500.4.v4.1 annot-version=v4.1 MGSSSSRLNGSTPSGSGTNSFKRRALASVFCGGSASQSPIEMGDHMDESLAGSLENLATFHDVSASSKQASSSNFGLETGLSSSSAESGDLSGSSNGNVE DTSAFKNSESQSQQVNISGSTMEAHAVNASVKEQTPTASASDDTAVAGVVGQDSGNLDSNGESISDANMDLSNTNSVIPASLSPQPCPEFLSSDREREAR AARVLLVDVVNIHSNILSISFEEISNREARRNSRRMFWDAFSRSNLRRNRDSPTIVFTSSHADDLGSHDRWLLDFGGDLHLDGVGRESRYPGTRSHHRSE RRWQSRRETFHDVRDELGWETSLCPAGLHPNGTCSCESSSVAVESSSHASISQIILLADALFEVLEEIHHHRLSLSPSMLSLPAPEAVVNSFPLKNYKKF QGTENVAQHEQQCHICLVDYEEGDKIRVLPCSHEYHMSCVDKWLKEIHGVCPLCRDGVCKGNVESPASNPEITSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45290			RING/U-box superfamily protein...		Potri.002G140500 [exp]	0	1
AT2G01490			phytanoyl-CoA dioxygenase (Phy...		Potri.006G222800 [exp]	1.00	0.7407
AT1G69340			appr-1-p processing enzyme fam...		Potri.010G161500 [exp]	4.58	0.6726
AT1G14670			Endomembrane protein 70 protei...		Potri.012G042300 [exp]	9.59	0.6778
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.007G058500 [exp]	13.41	0.6432
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	13.56	0.6400
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	21.49	0.6282
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G002200 [exp]	25.69	0.6659	Pt-CNGC.2
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.001G219500 [exp]	26.83	0.6358
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	27.96	0.6206
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.002G224800 [exp]	34.20	0.6381	Pt-SMT3.1

Compare expression of checked genes

Potri.002G140500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.