Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60220 194 / 2e-59 ATL4 TOXICOS EN LEVADURA 4 (.1) AT2G18650 86 / 3e-18 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT5G05810 85 / 4e-18 ATL43 RING/U-box superfamily protein (.1) AT4G28890 83 / 2e-17 RING/U-box superfamily protein (.1) AT3G48030 82 / 2e-17 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT2G20030 82 / 5e-17 RING/U-box superfamily protein (.1) AT5G40250 81 / 7e-17 RING/U-box superfamily protein (.1) AT4G30400 81 / 1e-16 RING/U-box superfamily protein (.1) AT1G22500 81 / 1e-16 AtATL15 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) AT4G40070 80 / 1e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G053600 [exp] 301 / 9e-101 AT3G60220 148 / 1e-41 TOXICOS EN LEVADURA 4 (.1) Potri.015G056800 [exp] 86 / 2e-18 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 83 / 2e-17 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 82 / 4e-17 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 82 / 4e-17 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 81 / 9e-17 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 81 / 1e-16 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 81 / 1e-16 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 80 / 3e-16 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023617 [exp] 88 / 2e-19 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10019973 [exp] 89 / 3e-19 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015502 [exp] 88 / 5e-19 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10034953 [exp] 82 / 4e-17 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 81 / 8e-17 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10029178 [exp] 79 / 3e-16 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012745 [exp] 79 / 3e-16 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10036466 [exp] 79 / 4e-16 AT1G72200 186 / 6e-55 RING/U-box superfamily protein (.1) Lus10014526 [exp] 79 / 5e-16 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10032161 [exp] 79 / 5e-16 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.002G140600.1 pacid=42777277 polypeptide=Potri.002G140600.1.p locus=Potri.002G140600 ID=Potri.002G140600.1.v4.1 annot-version=v4.1 ATGTCCGCTCCTCCATATTCGTTTATCCCTCTAAACAACACCGACGAGGCCAGCGATACAAGCGGAGGCACCAAGTCGCCCTTTCAGAACCTAAACTCAA GCATTTTGATCATCATTTTAATCCTCTCCGTAACTCTGTTAGTCTCTGTTTCTCTTTGTTTCCTTCTCCGTATCTTAAGCCGCCGTTCCCTCCGCCACCT TTCTCCCTCTAGAACCACCGCCATAGCTACCACAATAACAACCTTATCCTCTAACCGCCTCTCCAGTAACAACAACCATCGTGTTTCACCGGAAGATTTA GAGTCTTCCGTTTCTGACTCACTCCCTCTCTTCTCTTTCTCCTCCATCAAACACAGACCATCCTCTTCCCCTGAAATCTCCAGCGGCGATTGCGCGGTTT GTTTATCGACGTTCGAACCAGAGGATATCCTGCGATTGCTTCCGCTCTGCTGTCATGCTTTCCATGCACATTGCATTGAAACATGGCTCAATTCTAACCA ATCGTGTCCTCTTTGCCGGTCTCGTATTCATTTTTCGGAATCAGAGCTCGCCAAAGCTCTCTTTGAAGGTGACGCTCGTGGTGGTGATAGCTTCCGCCTT GAGATTGGCTCTATTAGCCGTCGAGAACATACTGCTCCTAACCCCGCGTCCTCTCTCTCTACAGCCACAGCCTCCGCCGGTGCAGACGAGGATCGGAGCT CGTACTCGGTTGGTTCGTTTGATTATGTCGTGGAGGAGGAATCGGAGGTTACTATCAGTCAATCGCACAGAAGGAGTATGTCGAAGGAGAGTGGTCGCGG GGGTGGTCTGACATTGTCCGAGGAGCCGATTCTGGCAGCAGAAGTGGCTTCGGCGAGAGGAAGTTTGTTAAGAGAATATGTTGATAGGCTGTCTGCTTCT CTCTCTTCACGTACGACATCTTTTAGAGGTTCTGGAAGGTTATTTACCGGTAGCAGTGGCCGGAGCGAGATTGCCGGTGGCGGAGATTATGGTTTGGGGG CGAGTCGTGCTGGAGAAGAAATTAGTGAGCTGTTTCGTTGGTTTTCAGGGGTATGA
AA sequence Show only first row Show all	>Potri.002G140600.1 pacid=42777277 polypeptide=Potri.002G140600.1.p locus=Potri.002G140600 ID=Potri.002G140600.1.v4.1 annot-version=v4.1 MSAPPYSFIPLNNTDEASDTSGGTKSPFQNLNSSILIIILILSVTLLVSVSLCFLLRILSRRSLRHLSPSRTTAIATTITTLSSNRLSSNNNHRVSPEDL ESSVSDSLPLFSFSSIKHRPSSSPEISSGDCAVCLSTFEPEDILRLLPLCCHAFHAHCIETWLNSNQSCPLCRSRIHFSESELAKALFEGDARGGDSFRL EIGSISRREHTAPNPASSLSTATASAGADEDRSSYSVGSFDYVVEEESEVTISQSHRRSMSKESGRGGGLTLSEEPILAAEVASARGSLLREYVDRLSAS LSSRTTSFRGSGRLFTGSSGRSEIAGGGDYGLGASRAGEEISELFRWFSGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60220		ATL4	TOXICOS EN LEVADURA 4 (.1)		Potri.002G140600 [exp]	0	1
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	6.48	0.8855
AT4G31560		HCF153	high chlorophyll fluorescence ...		Potri.003G203300 [exp]	19.74	0.8601
AT3G02300			Regulator of chromosome conden...		Potri.017G099900 [exp]	23.10	0.8707
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.012G016500 [exp]	32.98	0.8573
					Potri.003G131550 [exp]	34.35	0.8643
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	43.45	0.7640
AT5G63830			HIT-type Zinc finger family pr...		Potri.003G145100 [exp]	44.49	0.8512
AT1G74830			Protein of unknown function, D...		Potri.012G073400 [exp]	49.59	0.8475
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Potri.002G102600 [exp]	51.30	0.8505
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	53.47	0.7685

Compare expression of checked genes

Potri.002G140600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.