Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00026 291 / 8e-99 SD3 SEGREGATION DISTORTION 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G054400 [exp] 536 / 0 AT4G00026 287 / 5e-97 SEGREGATION DISTORTION 3, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042893 [exp] 317 / 4e-108 AT4G00026 275 / 2e-92 SEGREGATION DISTORTION 3, unknown protein Lus10028190 [exp] 313 / 1e-105 AT4G00026 275 / 5e-91 SEGREGATION DISTORTION 3, unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0455 [poplar] [flax] MIM-OM_import PF08294 [poplar] [flax] TIM21 TIM21
Representative CDS sequence Show only first row Show all	>Potri.002G140700.1 pacid=42778671 polypeptide=Potri.002G140700.1.p locus=Potri.002G140700 ID=Potri.002G140700.1.v4.1 annot-version=v4.1 ATGCAGCATATCAGGAGATGCAGTGGTCCTTTGAGATCTCAAAAAGGGTTGTCGTTATTTTTGGGGAGAAAAATTCTTAAGGAAGTATCTGATGTGGGTT TGGCGGCCTTTTCAACACCCATGGTTGCACAAAGAGGTGCACTTGGTAATTCAGTCACTAGGTCGCCAAAGTCAGATTACGTGAGACATTTTAGTGCCAA TGCCAACCATTTGACTAAGGACATACTTCGGCATAATGGTATCCCTGCTATCTATGGAGGTCAGCCTAATAGAGAATACTTGGTTAGCCTTAGGTCATCC TTTCAAATCATGGAAACCCATGGGGAAAGCACCATTAATATTTGCTTTGCTAGATCTTTCGCATCGAAAGCTTCAAAGAAAGAGACGCATAAACAATCTG AGACCAAAAAAGACGTATCTACTGTTGAGGATCCTTTTGATGCTCCAACATACAATATCCCAGAGAAGCCTGTGACGTTTACAGAAGGTGCTTCCTACAG CATTATAATTCTTGCAGGACTTGCTGTTGCAGCTGCTGCGGCTTATGCTGTTTTTAAGGAGCTGATATTTGAACCAAAAGAGTACAAGATCTTTAACAAG GCTCTGAAAAGGATTCAAGATGACAGTCAGGTCAGAGTGAGAATTGGATCTCCTATTACGGGTTATGGTCAGGAAAGTAGAAATCGTGCTGCTCGCCAAC GTATTCCCAATAGGATCTTTACTGATGAAGATGGTGTGGAGCATGTCCAGATCAATTTCTATATTCGTGGGCCGCATGGTGCTGGGAAGGTTTCTGCTGA AATGTTCAAAGACAAAGTGGACAAGCAGTGGAAGTATACATATCTAATTGTGGAGGTCATGCAACCTTCGCGATCCCAATTGATTCTGGAGTCATATATG CCAGCGCCAGTGGCCACGTAA
AA sequence Show only first row Show all	>Potri.002G140700.1 pacid=42778671 polypeptide=Potri.002G140700.1.p locus=Potri.002G140700 ID=Potri.002G140700.1.v4.1 annot-version=v4.1 MQHIRRCSGPLRSQKGLSLFLGRKILKEVSDVGLAAFSTPMVAQRGALGNSVTRSPKSDYVRHFSANANHLTKDILRHNGIPAIYGGQPNREYLVSLRSS FQIMETHGESTINICFARSFASKASKKETHKQSETKKDVSTVEDPFDAPTYNIPEKPVTFTEGASYSIIILAGLAVAAAAAYAVFKELIFEPKEYKIFNK ALKRIQDDSQVRVRIGSPITGYGQESRNRAARQRIPNRIFTDEDGVEHVQINFYIRGPHGAGKVSAEMFKDKVDKQWKYTYLIVEVMQPSRSQLILESYM PAPVAT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.002G140700 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.002G142700 [exp]	1.41	0.7512	BSTCP.2
AT2G20060			Ribosomal protein L4/L1 family...		Potri.004G004800 [exp]	4.47	0.7636
AT1G29250			Alba DNA/RNA-binding protein (...		Potri.018G029300 [exp]	13.41	0.7337
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.017G026300 [exp]	14.83	0.6673
AT3G09890			Ankyrin repeat family protein ...		Potri.016G097900 [exp]	15.49	0.7426
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209700 [exp]	19.20	0.7037
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.007G048300 [exp]	19.62	0.7237	Pt-CYCD3.3
					Potri.010G058600 [exp]	23.23	0.7195
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Potri.018G050200 [exp]	29.79	0.7094
AT4G01220		MGP4	male gametophyte defective 4, ...		Potri.014G092400 [exp]	31.63	0.6125

Compare expression of checked genes

Potri.002G140700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.