Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13970 941 / 0 zinc ion binding (.1) AT1G60560 567 / 0 SWIM zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G054600 [exp] 1280 / 0 AT4G13970 1033 / 0.0 zinc ion binding (.1) Potri.006G245800 [exp] 588 / 0 AT1G60560 649 / 0.0 SWIM zinc finger family protein (.1.2) Potri.007G106000 [exp] 574 / 0 AT1G60560 1192 / 0.0 SWIM zinc finger family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003970 [exp] 1009 / 0 AT4G13970 964 / 0.0 zinc ion binding (.1) Lus10035898 [exp] 578 / 0 AT1G60560 1123 / 0.0 SWIM zinc finger family protein (.1.2) Lus10025765 [exp] 570 / 0 AT1G60560 1112 / 0.0 SWIM zinc finger family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G140800.2 pacid=42779295 polypeptide=Potri.002G140802.1.p locus=Potri.002G140800 ID=Potri.002G140800.2.v4.1 annot-version=v4.1 ATGGCCAGATGGGATGAGATTCTGTCCATTCCTGTGCAGAATCCTCCAACGTTGGAATTTTCTGCTTCTGATATTGTATGGTCAAAGGTTGGAGGCTGGC GCGACAATTTAGATAGACTTGCTCTTATCCCTTTTGCTAGAGTCGATGATTTTGTAAGAGGCGAGCCTGCTAATAAAGACTGTCCAACAAGATTTCATGT TGAAGCTAGAAGGCGTCGGCCTCCTCAGACATCTTACAAGCAAAAGGTTGATGGCATCCTTGAGTACATATTATATTGGTGTTCTTTTGGCCCTGATGAT CACCGGAAAGGTGGCATAGTACGGCCCAGTAGAACTACTTATGTTCCAAAAAAGAAAAATGCTGGTAGACCAAATACCAAGAGGGGGTACACCTGCCATT TTATTGTGAAACGTTTAATTTCTGAACCATCTGTAGCACTGATCATATATAATCAGGACAAGCACGTGGATAAAAAAGGGTTACCGTGCCATGGCCCTCA GGATAAGAAGGCTGAAGGAACACATGCTATGTTTGCCCCTTATATCTCAGAGGATCTTCGGCTTCGTGTTTTATCTTTATTATATGTTGGGGTCTCTGTG GAGACCATAATGCAGAGACACAATGAATCAGTAGAGAGGCAGGGTGGTCCATGTAATCGTGATGACCTGTTGACTCACAGGTATGTGCGGAGGCAGGAAA AAAGCATCCGCTGCTCTACATTTGAACTGGACACTGATGATGCAGTTAGCATTAACATGTGGGTTGAAAGCCATCTGAATCAGGTATTTTTCTTTGAGGA TTTTTCTGATTCTGAGCCTTTCACTTTGGGAATACAAACAGAGTGGCAGTTGCAACAAATGATTCGGTTTGGCAATCGCAGTCTTGTGGCTTCTGATTCA AGGTTTGGAACAAACAAATTGAAGTATCCTGTTCACAGTCTTGTTGTGTTCAACTCAGACAATAAGGCCATCCCTGTAGCTTGGATAATAACACCAAGAT TCGCTAATGCTGATGCACATAGAAGGATGAGGGCACTTTACAACAGAGTTCGTACTAAAGATCCTTCGTGGAAGTTGGCTGGGTTTATAGTGGATCATCC CTTGACAGACATCCTCACAATTAGGGATGTGTTTCAGTGCTCTGTTTTGACATCTTTTTGGCGAGTTCGCCATGCTTGGCTTAAGAATCGAATAAAGCGG TGCATGGAAACAGAGTTGCGTGTCCAGATATCGAAATGGCTTGGACAGACAGTATATGATATTTGCAGAGGACAAGCAACTGTAGGTTTATTTGAAGTTC TCATGGAAGATTTTCTTGATGGCTCTAGCTTTATGGATTACTTCAAGGCAACCTGGTATCCTAGAATACGGAGTTGGACTACTGCAATAAAAACTCTTCC ACTGGCAAGCCAAGGGACATGTGCAGCAATGGAATTTTACCACAACCAACTGAAAGTCAGGCTTTTGAATGAGAAGAAACCTGGTGTTTATCAGCGTGCT GATTGGTTGGTTGATAAGTTGGGTACAAAAGTGCATTCTTACTTCTGGCTTGATGAATACTCAGAAAAGGATGATTTTGCAAGATACTGGAAAGATGAGT GGGTCAGTGGTTTAACATCTTGGCGCAAAGCTTTGAAGATTCCAGACTCTGATGTTGTCATGGATGGTAGATGTGCAAAAGTTACTGACCAGCTTTATCG AGATAGGGTTTATGTTGTCTGGAACCCTGGTTCACAATTTGCAATTTGTGACTGCAGATGGGCAGAAATGGGCAACTTATGTGAGCATGTCTTTAAAGTT ATTAAATTGTGTCATGATAAAAGGTCTGTTTCCCTAGCAGTTTCTGTACAGAGGAAATTAGATGGATTAGTTAATTTAGATAGCTGCCAAACAAATGCAG GTACCACTTGGAGAAAAGCTGTGAACTCACTTGAGCAGCTGGTGGTTCGGGGGACCAATTCCTCAAATCAAGATAGAGAATTGGTGAATGAGAATCATCA TATTGACAAAGATATGTCATCTCCCAATGAGAATGATTATCAGGAAAGAGACAGACATGGGCTTTCTCGTGGTATTACAGGTGATTTTGTTGAGGTTGCA TCTGATGAAAGCTTAGAAAATGGAGACAGGATTGTAAATAATGCAGGTTCTAGCACGAGTAAGAGTCCACCTTCAATTGATGTTTTGACTGATCAAGGTA GACATGAACACAATAGTATAATGGATGTGGAACCATCATCCATCAATATCCCTCCATCAGTGAAGGGGTCCATGAAGCAATGTGCAGTGACTAACCAAAA TATTGCTTGCAACAAGGATCCTAAGCCGTCAGTAATTAGTAACACAGCAGATGCAAGTACTGACAAGGCTTCTGACTCACAAATGATTGATAGAATTCAA ACTTTGACGGGAACAACAGATGATGAAGTGATGAAACCAAAAAGTGAGGGTGGAAGCACTAAGCAG
AA sequence Show only first row Show all	>Potri.002G140800.2 pacid=42779295 polypeptide=Potri.002G140802.1.p locus=Potri.002G140800 ID=Potri.002G140800.2.v4.1 annot-version=v4.1 MARWDEILSIPVQNPPTLEFSASDIVWSKVGGWRDNLDRLALIPFARVDDFVRGEPANKDCPTRFHVEARRRRPPQTSYKQKVDGILEYILYWCSFGPDD HRKGGIVRPSRTTYVPKKKNAGRPNTKRGYTCHFIVKRLISEPSVALIIYNQDKHVDKKGLPCHGPQDKKAEGTHAMFAPYISEDLRLRVLSLLYVGVSV ETIMQRHNESVERQGGPCNRDDLLTHRYVRRQEKSIRCSTFELDTDDAVSINMWVESHLNQVFFFEDFSDSEPFTLGIQTEWQLQQMIRFGNRSLVASDS RFGTNKLKYPVHSLVVFNSDNKAIPVAWIITPRFANADAHRRMRALYNRVRTKDPSWKLAGFIVDHPLTDILTIRDVFQCSVLTSFWRVRHAWLKNRIKR CMETELRVQISKWLGQTVYDICRGQATVGLFEVLMEDFLDGSSFMDYFKATWYPRIRSWTTAIKTLPLASQGTCAAMEFYHNQLKVRLLNEKKPGVYQRA DWLVDKLGTKVHSYFWLDEYSEKDDFARYWKDEWVSGLTSWRKALKIPDSDVVMDGRCAKVTDQLYRDRVYVVWNPGSQFAICDCRWAEMGNLCEHVFKV IKLCHDKRSVSLAVSVQRKLDGLVNLDSCQTNAGTTWRKAVNSLEQLVVRGTNSSNQDRELVNENHHIDKDMSSPNENDYQERDRHGLSRGITGDFVEVA SDESLENGDRIVNNAGSSTSKSPPSIDVLTDQGRHEHNSIMDVEPSSINIPPSVKGSMKQCAVTNQNIACNKDPKPSVISNTADASTDKASDSQMIDRIQ TLTGTTDDEVMKPKSEGGSTKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13970			zinc ion binding (.1)		Potri.002G140800 [exp]	0	1
					Potri.018G052350 [exp]	12.24	0.8561
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	13.11	0.8505
AT1G64310			Tetratricopeptide repeat (TPR)...		Potri.015G082283 [exp]	18.49	0.8348
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145100 [exp]	18.70	0.8467
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	18.97	0.8333
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.001G148100 [exp]	22.04	0.8419
AT1G27700			Syntaxin/t-SNARE family protei...		Potri.004G090200 [exp]	26.73	0.8332
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.019G053900 [exp]	27.85	0.8363
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078900 [exp]	29.74	0.7959	GN.1
					Potri.001G404951 [exp]	34.46	0.8112

Compare expression of checked genes

Potri.002G140800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.