Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MSJ1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44110 504 / 3e-178 ATJ3 DNAJ homologue 3 (.1.2) AT5G22060 493 / 3e-174 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 170 / 4e-49 ATERDJ3B DNAJ heat shock family protein (.1) AT1G80030 145 / 2e-38 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT5G48030 135 / 3e-35 GFA2 gametophytic factor 2 (.1) AT2G22360 130 / 3e-33 DNAJ heat shock family protein (.1) AT4G39960 125 / 2e-31 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G17830 116 / 5e-28 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 111 / 2e-27 DNAJ heat shock family protein (.1) AT2G20550 102 / 1e-24 HSP40/DnaJ peptide-binding protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243100 [exp] 541 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 537 / 0 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 530 / 0 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.014G055300 [exp] 323 / 5e-109 AT3G44110 251 / 5e-81 DNAJ homologue 3 (.1.2) Potri.014G122600 [exp] 164 / 1e-46 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 161 / 7e-46 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.001G215132 [exp] 150 / 2e-43 AT3G44110 167 / 5e-51 DNAJ homologue 3 (.1.2) Potri.003G031800 [exp] 140 / 1e-36 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.007G094900 [exp] 129 / 4e-33 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028188 [exp] 546 / 0 AT5G22060 563 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10042891 [exp] 545 / 0 AT5G22060 554 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10004109 [exp] 452 / 2e-158 AT5G22060 597 / 0.0 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10008652 [exp] 228 / 8e-72 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10002733 [exp] 228 / 9e-72 AT5G22060 299 / 6e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) Lus10013364 [exp] 217 / 2e-67 AT3G44110 291 / 3e-96 DNAJ homologue 3 (.1.2) Lus10022297 [exp] 171 / 3e-49 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 169 / 1e-48 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 167 / 1e-47 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 163 / 2e-46 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF00684 [poplar] [flax] DnaJ_CXXCXGXG DnaJ central domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G141100.6 pacid=42780008 polypeptide=Potri.002G141100.6.p locus=Potri.002G141100 ID=Potri.002G141100.6.v4.1 annot-version=v4.1 ATGTTTGGGCGTGCTCCAAGGAGGAGTGACAACACCAAGTATTATGAGGTTCTGGGTGTGTCAAAGGGTGCAAGTCAAGATGAACTGAAGAAGGCTTATA GGAAAGCTGCCATAAAGAATCATCCTGATAAAGGTGGAGATCCTGAAAAGTTCAAGGAGTTGTCTCAAGCTTATGAAGTCCTTAGTGATCCAGATAAAAG AGATATTTATGATCAATATGGGGAAGATGCACTTAAGGAGGGGATGGGACCTGGTGGTGGTGGTGGTGGTCATAATCCATATGATATATTTGAATCATTT TTTGGTGGAGGTGGTTTTGGTGGTGGTGGCAGCTCAAGAGGAAGAAGGCAGAAGCAAGGTGAAGATGTAGTGCACCCTCTGAAGGTTTCCTTGGAGGATT TGTACAATGGAACTTCCAAGAAACTCTCTCTTTCTAGAAACATTTTGTGTGCCAAATGTAAAGGGAAAGGCTCAAAGAGTGGAGCCTCTGGGACATGTCG TGGCTGCCAAGGTACTGGAATGAAAGTTTCAATCCGACAAATTGGATTGGGCATGGTCCAACAAATGCAACATGTGTGTCCTGAATGCAGAGGCTCAGGT GAGCTAATTAGTGAGAAGGATAAATGCCCTCATTGCAGAGGGAATAAGGTAACGCAGGAAAAGAGGGTGCTGGAAGTGCATGTTGAAAGGGGAATGCGAC ATGGCCAGAAGATAGTTTTTGAAGGTCAAGCTGATGAAGCTCCTGACACAATTACAGGGGATATTGTTTTTGTATTGCAACTGAAAGAGCACTCCAAGTT TGAACGGAAAATGGATGATCTCTTTGTGGAACACTCTGTCAGTTTAACAGAGGCTCTTTGCGGGTATCAGTTTGCCCTTACCCATCTCGATGGTCGGCAG CTTCTTATTAAATCAAATCCTGGGGAGATTGTAAAACCTGGTCAATACAAAGCAATTAATGATGAAGGAATGCCACATCATCATAGGCCCTTCATGAAGG GCAAGCTCTATATCCATTTTAATGTGGAGTTCCCCGAGTCGGGGACTCTATCCCCTGAGCAGTGCCGTACTTTAGAGACTATATTACCCCCAAGGCAAAG CAAAAACTTGTCAGAGATGGAGTTGGATAATTGCGAAGAGACAATTATGCATGATGTCAATATTGAGGAGGAGAAAAGGCGCAAACAGCAGCAGCGCCAG CAGCAGGAGGCATATGATGAGGATGATGATGATGAAGAATCACCTATGCCCCGAGTGCAGTGTGCCCAGCAGTAA
AA sequence Show only first row Show all	>Potri.002G141100.6 pacid=42780008 polypeptide=Potri.002G141100.6.p locus=Potri.002G141100 ID=Potri.002G141100.6.v4.1 annot-version=v4.1 MFGRAPRRSDNTKYYEVLGVSKGASQDELKKAYRKAAIKNHPDKGGDPEKFKELSQAYEVLSDPDKRDIYDQYGEDALKEGMGPGGGGGGHNPYDIFESF FGGGGFGGGGSSRGRRQKQGEDVVHPLKVSLEDLYNGTSKKLSLSRNILCAKCKGKGSKSGASGTCRGCQGTGMKVSIRQIGLGMVQQMQHVCPECRGSG ELISEKDKCPHCRGNKVTQEKRVLEVHVERGMRHGQKIVFEGQADEAPDTITGDIVFVLQLKEHSKFERKMDDLFVEHSVSLTEALCGYQFALTHLDGRQ LLIKSNPGEIVKPGQYKAINDEGMPHHHRPFMKGKLYIHFNVEFPESGTLSPEQCRTLETILPPRQSKNLSEMELDNCEETIMHDVNIEEEKRRKQQQRQ QQEAYDEDDDDEESPMPRVQCAQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.002G141100 [exp]	0	1	Pt-MSJ1.3
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	2.23	0.8968
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	3.00	0.8914
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	4.24	0.8708	Pt-ATCNGC14.1
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	5.29	0.8943
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	6.00	0.8417
AT1G07510		FTSH10	FTSH protease 10 (.1)		Potri.009G033600 [exp]	6.63	0.8510
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	8.24	0.8772
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.006G003100 [exp]	8.60	0.8402
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	10.48	0.8740	HMGB915
AT3G19910			RING/U-box superfamily protein...		Potri.007G073200 [exp]	11.22	0.8563

Compare expression of checked genes

Potri.002G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.