Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44950 877 / 0 RDO4, HUB1 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) AT1G55250 422 / 1e-133 HUB2, HISTONEMONO-UBIQUITINATION2 histone mono-ubiquitination 2 (.1.2.3.4) AT5G05130 57 / 5e-08 DNA/RNA helicase protein (.1) AT4G03510 54 / 1e-07 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G42030 51 / 2e-06 RING/U-box superfamily protein (.1) AT3G58030 50 / 7e-06 RING/U-box superfamily protein (.1.2.3.4) AT1G74990 44 / 5e-05 RING/U-box superfamily protein (.1) AT1G19310 45 / 8e-05 RING/U-box superfamily protein (.1) AT3G26730 45 / 0.0002 RING/U-box superfamily protein (.1) AT4G21070 45 / 0.0003 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G055800 [exp] 1397 / 0 AT2G44950 917 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Potri.001G008800 [exp] 483 / 3e-157 AT1G55250 993 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Potri.003G216651 [exp] 191 / 4e-53 AT1G55250 281 / 9e-92 histone mono-ubiquitination 2 (.1.2.3.4) Potri.006G035700 [exp] 53 / 8e-07 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.003G148300 [exp] 52 / 8e-07 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 49 / 4e-06 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.014G145300 [exp] 50 / 6e-06 AT3G26730 623 / 0.0 RING/U-box superfamily protein (.1) Potri.016G033800 [exp] 50 / 8e-06 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.016G034000 [exp] 50 / 9e-06 AT5G05130 700 / 0.0 DNA/RNA helicase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042890 [exp] 1059 / 0 AT2G44950 885 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10028187 [exp] 893 / 0 AT2G44950 731 / 0.0 REDUCED DORMANCY 4, histone mono-ubiquitination 1 (.1) Lus10041689 [exp] 446 / 4e-143 AT1G55250 976 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10024057 [exp] 424 / 3e-135 AT1G55250 911 / 0.0 histone mono-ubiquitination 2 (.1.2.3.4) Lus10022569 [exp] 52 / 4e-07 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10039001 [exp] 53 / 1e-06 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10011184 [exp] 50 / 3e-06 AT4G03510 164 / 5e-50 RING membrane-anchor 1 (.1.2) Lus10018489 [exp] 50 / 3e-06 AT4G03510 159 / 7e-48 RING membrane-anchor 1 (.1.2) Lus10035163 [exp] 50 / 8e-06 AT3G26730 610 / 0.0 RING/U-box superfamily protein (.1) Lus10031993 [exp] 50 / 8e-06 AT3G26730 612 / 0.0 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.002G141300.3 pacid=42778822 polypeptide=Potri.002G141300.3.p locus=Potri.002G141300 ID=Potri.002G141300.3.v4.1 annot-version=v4.1 ATGGGGAGTACAGGGGAGCCAGACAGAAAACGGCGTCACTTTAGCTCTATATCATCTCCACCTGCTGCTATGGCTAAAAAGCAGCCGTTCTCGCATTTAT CCGAGGACAAAAAGCTTGATACCACTGTTCTTCAATACCAAAATCAAAAGCTTCAACAGAAGTTGGAGGCTCAGAAGGTTGAGCATTTTGCACTAGGAAA CAGGTTCTCTCAACTGAAGGAGAAACAGCAACCATACAATTCCACATTAAACGCTGTCAACAAGTCTTGGGAAGTGTTGGTTAGTGACTTGGAAACGTGT TCCAACCGCACAAGAGAGTGGAGCAATGGGCAAGATGTCAAACATATACCAGTTACAAAAGATGAGAGCTCATCTTTTCTCAAGGATGCATTCCTTAGCC GACTTATGGAAACTGGTGCAACTGAAAGTTCCTCTTCAAATAATTGCCCTGATCAGATGGAAGTGGATATAGAAACTGCCTTTGAAAAGAATAAAAATGT TGTACATAATATAGTGGATACAATCAATGGCCTTTGGCATCTGAAGGATGGATTACATGCAGCAGTTTTGAAACAGCTTCCAGAAGATGATGCATGTAGG CAAATGACATCTAATGAATTGGAGATGGAACTTAAGAATTTGAGGTCTGGGCTAAGTGACCTTCATTTGAAGCACAAATCACTGGCAATGGAATTGCAGA ACCATCGAGACGCTGATGCAAAAAATAAAGCAGAGCTTAAGCATCTAAAAGGTGAATTGGAGATTGCAGTTGCAGAACTGAAAGACAGCAACTGTAAATT GGCAACCCTTAAAGCAGAGAGAGATGCAACAAAAGGGGCATTCTTTCCAGTCTTAAACTTGGGAAGTAAGCACATTGGTGGTGATAAGGTTAGGGATAAA CAAAAGGATCTGCAAGAAATGGAGTCTGCTGTCAAAGAGCTTTTAGACCAAGCTTCTTCTCGACTACAAGAACTAAAAGATCTTCACGAAGAAAGGTTAA AAATATTACAGAAGCTATCCAATTTGCAGAACTTGTTGAAGAATGTGAAGAGTATATCTTCATCACAAGCCTACCTCTTGGTGAGAGATCAACTAGAGAA ATCAAAATCAGAAGTTCTCCAATATCGGGCCTTAATTGAGAAACTTCAGGTTGAGAAGGATAACCTTGTCTGGAAGGAAAGAGAATTAAATGTGAAAAAT GACTTGGTTGATGTTTGTCGAAGATCTACTGCAGTTGTGGATTCTAGAATTGCTGTTTTAGGGAAAGAAATACAAAAACAGATTAATGAAAGAAACATGA TTGAGACCAAGTTGGAAGAGGCATCTAGAGAGCCTGGAAGAAAAGAAATCATAGCTGAATTCAAAGCCTTGGTTTCCTCATTTCCTGAGGAAATGAGCTC TATGCAACGCCAATTAAGTAACTCCAAAGACGCTTCTTCTGATATTCATTCTTTGCGAGCTGATGGGCAGTCTCTTTCTACTGTTCTGGATAGGAAGGCC AAAGAGTGTGAAAATTTGTCTGCCAGATCCACAAACCAAAACACCGAGATACATAAGTTGCAGTCTGTGGTCCAAGATCTGAAGGAAAGTGAACTGGAGT TGAAACTGATTTTGGACATGTATCGGGGTGAATCCACTTATTCAAGGGATGTCTTAGAAGCTAGGGATCTCGAATACGAGGCAAGGGCTCAAGTTCAAAG TTTTAAATCCTCTCTTGATGAGCATAATTTGGAATCACGAGTGAAGACAGCAAACAAAGCTGAGGCCAGATCCCAGCAAAGGCTAGCTGCTGCGGAAGCT GAGATTGCTGATTTGAGACAGAAATTAGAAGCTTCTAAAAGGGATATGTCTAGACTTTCTGATGTCCTGAAATCAAAAAATGAAGGAAACGAGGCCTACT TATCTGAAATAGAGACAATTGGTCAAGCATATGATGACATGCAAACTCAAAATCAACATCTGTTGCAGCAAATCACAGAGAGAGATGACTATAACATTAA GCTTGTTTTAGAGGGTGTGAGAGCAAGACAAATGCATGGTTCTCTGCTCATGGACAAACAAATCATGGAAAAGGAGATTCAGCAAGCCAATATTTCCCTC AATTTATTTTATGTGAAAGCTGCAAGAATAGAAGATCAGTCAAAATTCTGCTCAGACCAGGTTCATAAACTTGTGGAAGATAAGATTCAAAGGTCAGTTA CTCTGGAAAATACACAAAAGAAATTGCTAGATATGGGAAGATCATCTAGTCAAGCAAGAGAGTCGTTGGAGGATTCACAATCTAGAGTTGAAAGAAGTCA ATCTGCACTGCTGGAGCTGCGGATAGATCTGGAGAAAGAGAGGTTTGACAAGAGGAGAATGGAAGAGGAGTTGGAAGTTGTAAGGAGAAAGGTTTCTCGT CTTCAAGCACAGACAGAGGGGTCTTCTATTGTAGAAAAACTTCAGCAGGAGCTTCAAGAATACAGGGAAATAGTTAAGTGCAGTATCTGTCTTGACAGAC CTAAAGAGGTTGTCATAACAAAATGCTACCATTTGTTCTGCAACACTTGTGTACAGAGAATTCTGGAAAGCCGTCACCGCAAGTGTCCAGTATGTAGCAT GAGTTTTGGGCATAATGACGTGAGGCTTGTTTATATCTGA
AA sequence Show only first row Show all	>Potri.002G141300.3 pacid=42778822 polypeptide=Potri.002G141300.3.p locus=Potri.002G141300 ID=Potri.002G141300.3.v4.1 annot-version=v4.1 MGSTGEPDRKRRHFSSISSPPAAMAKKQPFSHLSEDKKLDTTVLQYQNQKLQQKLEAQKVEHFALGNRFSQLKEKQQPYNSTLNAVNKSWEVLVSDLETC SNRTREWSNGQDVKHIPVTKDESSSFLKDAFLSRLMETGATESSSSNNCPDQMEVDIETAFEKNKNVVHNIVDTINGLWHLKDGLHAAVLKQLPEDDACR QMTSNELEMELKNLRSGLSDLHLKHKSLAMELQNHRDADAKNKAELKHLKGELEIAVAELKDSNCKLATLKAERDATKGAFFPVLNLGSKHIGGDKVRDK QKDLQEMESAVKELLDQASSRLQELKDLHEERLKILQKLSNLQNLLKNVKSISSSQAYLLVRDQLEKSKSEVLQYRALIEKLQVEKDNLVWKERELNVKN DLVDVCRRSTAVVDSRIAVLGKEIQKQINERNMIETKLEEASREPGRKEIIAEFKALVSSFPEEMSSMQRQLSNSKDASSDIHSLRADGQSLSTVLDRKA KECENLSARSTNQNTEIHKLQSVVQDLKESELELKLILDMYRGESTYSRDVLEARDLEYEARAQVQSFKSSLDEHNLESRVKTANKAEARSQQRLAAAEA EIADLRQKLEASKRDMSRLSDVLKSKNEGNEAYLSEIETIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQMHGSLLMDKQIMEKEIQQANISL NLFYVKAARIEDQSKFCSDQVHKLVEDKIQRSVTLENTQKKLLDMGRSSSQARESLEDSQSRVERSQSALLELRIDLEKERFDKRRMEEELEVVRRKVSR LQAQTEGSSIVEKLQQELQEYREIVKCSICLDRPKEVVITKCYHLFCNTCVQRILESRHRKCPVCSMSFGHNDVRLVYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	0	1
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	1.73	0.9233
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	2.00	0.9187
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	3.46	0.9032
AT1G21610			wound-responsive family protei...		Potri.005G182300 [exp]	4.47	0.8874
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	5.91	0.8826
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	6.00	0.8842
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.005G045700 [exp]	6.16	0.8456
AT1G11060			WAPL (Wings apart-like protein...		Potri.011G049300 [exp]	10.81	0.8739
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	10.95	0.8844	Pt-LD.2
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	11.61	0.8364	AP2.15,RAP2

Compare expression of checked genes

Potri.002G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.