Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL15.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16720 331 / 3e-117 Ribosomal protein L23/L15e family protein (.1) AT4G17390 330 / 7e-117 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057300 [exp] 365 / 2e-130 AT4G16720 331 / 4e-117 Ribosomal protein L23/L15e family protein (.1) Potri.013G106800 [exp] 358 / 6e-128 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.003G078700 [exp] 358 / 6e-128 AT4G16720 333 / 1e-117 Ribosomal protein L23/L15e family protein (.1) Potri.001G156100 [exp] 357 / 2e-127 AT4G16720 330 / 2e-116 Ribosomal protein L23/L15e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009653 [exp] 348 / 9e-124 AT4G16720 350 / 2e-124 Ribosomal protein L23/L15e family protein (.1) Lus10004743 [exp] 343 / 7e-122 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10007805 [exp] 343 / 7e-122 AT4G16720 345 / 1e-122 Ribosomal protein L23/L15e family protein (.1) Lus10009017 [exp] 341 / 5e-121 AT4G16720 343 / 1e-121 Ribosomal protein L23/L15e family protein (.1) Lus10000165 [exp] 342 / 9e-121 AT4G16720 344 / 2e-121 Ribosomal protein L23/L15e family protein (.1) Lus10028965 [exp] 342 / 1e-120 AT4G16720 343 / 5e-121 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [poplar] [flax] S24e_L23_L15e PF00827 [poplar] [flax] Ribosomal_L15e Ribosomal L15
Representative CDS sequence Show only first row Show all	>Potri.002G141500.1 pacid=42778597 polypeptide=Potri.002G141500.1.p locus=Potri.002G141500 ID=Potri.002G141500.1.v4.1 annot-version=v4.1 ATGGGGGCTTACAAGTATGTTTCGGAGCTATGGAGGAAGAAGCAATCGGATGTTATGAGGTTCTTGCAGAGGGTGAGGTGCTGGGAATACCGTCAACATC CTTCGATTGTGCGTGTCACTCATCCTACTCGTCCTGACAAGGCTCGCCGTTTGGGATACAAGGCAAAACAGGGGTATGTTGTCTATCGAATCCGTGTGAG GCGTGGTGGTAGGAAGAGGCCTGTTCCGAAGGGTATTGTTTATGGCAAGCCAACAAACCAGGGTGTTACCCAGCTCAAGTTCCAGCGTAGCAAGAGGTCA GTTGCTGAAGAGCGTGCGGGGCGGAAATTAGGTGGGCTCAAAGTTCTCAACTCATACTGGATTAATGAGGATTCCACGTACAAATATTTTGAGGTTATCC TGGTCGATGCTGCTCACAATGCCATTCGCAATGATCCAAGGATCAATTGGATCTGCAATCCTGTCCATAAACACAGAGAGCTACGTGGTCTAACATCTGC TGGAAAGAAGTACAGGGGTCTCCGAGGAAGGGGACACTTGCATCACAAGGCACGGCCTTCCAGGAGGGCAACGTGGAAAAGGAACCAAACTCTTTCCCTC CGTCGGTATCGGTGA
AA sequence Show only first row Show all	>Potri.002G141500.1 pacid=42778597 polypeptide=Potri.002G141500.1.p locus=Potri.002G141500 ID=Potri.002G141500.1.v4.1 annot-version=v4.1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRS VAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHHKARPSRRATWKRNQTLSL RRYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.002G141500 [exp]	0	1	Pt-RPL15.6
AT5G04800			Ribosomal S17 family protein (...		Potri.010G241200 [exp]	5.74	0.9545
AT2G42740		RPL16A	ribosomal protein large subuni...		Potri.011G069200 [exp]	6.00	0.9535	L16.2
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Potri.016G063200 [exp]	6.63	0.9490	Pt-RPS5.1
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.014G057300 [exp]	7.00	0.9442	Pt-RPL15.5
AT3G57490			Ribosomal protein S5 family pr...		Potri.006G052400 [exp]	8.94	0.9330	Pt-RPS2.2
AT5G09500			Ribosomal protein S19 family p...		Potri.002G043200 [exp]	10.09	0.9446
AT3G02560			Ribosomal protein S7e family p...		Potri.004G099200 [exp]	11.09	0.9502
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.013G027600 [exp]	13.30	0.9155	ATBBC1.1
AT2G09990			Ribosomal protein S5 domain 2-...		Potri.010G091000 [exp]	14.69	0.9288
AT4G14320			Zinc-binding ribosomal protein...		Potri.007G071800 [exp]	15.00	0.9407

Compare expression of checked genes

Potri.002G141500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.