Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04410 572 / 0 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G43330 570 / 0 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT5G56720 546 / 0 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G58330 253 / 2e-80 lactate/malate dehydrogenase family protein (.1.2.3) AT3G47520 56 / 1e-08 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G071000 [exp] 587 / 0 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G166800 [exp] 585 / 0 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.002G141900 [exp] 527 / 0 AT1G04410 501 / 5e-180 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.008G031700 [exp] 227 / 2e-70 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.001G376500 [exp] 51 / 5e-07 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011819 [exp] 584 / 0 AT5G43330 613 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021870 [exp] 571 / 0 AT5G43330 606 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10041144 [exp] 561 / 0 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021184 [exp] 310 / 4e-106 AT5G43330 322 / 1e-111 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10038668 [exp] 244 / 1e-77 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10037935 [exp] 243 / 3e-75 AT5G58330 709 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10021183 [exp] 110 / 6e-30 AT1G04410 123 / 6e-36 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G141700.1 pacid=42777878 polypeptide=Potri.002G141700.1.p locus=Potri.002G141700 ID=Potri.002G141700.1.v4.1 annot-version=v4.1 ATGGATCATGCTGTATTGCTTCAGAAAATTCTTGTTGTTTCATTTATTGTTGCTCTTTTTTGGAAGATAATTAGATATATGTGCAACCTCCTTAATGTAG AAAAAGAACCTGTGAGGGTTCTTGTAACTGGTGCTGCAGGGCAAATAGGCTATGCTATTGTTCCAATGATTGCCAGAGGTGTCATGCTAGGCCCTGATCA GCCTGTAATTCTTCACCTGCTTGATATTGAACCTGCAGCTGAGGCCTTGAATGGGGTCAAAATGGAATTGATTGATGCTGCCTTTCCTCTGCTCAAGGGA GTTATAGCTACTACGGATCCAATAGAGGCTTGCATGGGTGTCAACATTGCAGTCATGGTCGGTGGCTTTCCTCGGAAGGAAGGTATGGAGAGGAAGGATG TGATGTCTAAAAACGTGTCAATCTACAAGGCTCAGGCTTCAGCCTTGGAGAAGCATGCTGCTGAAGATTGCAAGGTGCTGGTAATCGCCAACCCAGCTAA CACCAATGCACTCATCCTGAAAGAATTTGCTCCTTCAATCCCAGAGAAAAACATCACATGTCTTACGCGACTTGACCATAACAGAGCATTAGGCCAAATA TCTGAGAGCTTAGATGTACAAGTTAGTGATGTGAAGAATGTCATCATCTGGGGAAACCATTCTTCAACTCAGTATCCAGATGTCAACCACGCAACTGTAC AGACCAGCAGCGGGGAGAAGCCTGTCAGAGAACTTGTCTCTGATGATAAATGGTTAAATGCTGAGTTCATCACCACCGTGCAGCAGCGTGGTGCAGCCGT TATCAAAGCTAGAAAACTATCGAGTGCATTGTCTGCTGCCAGCGCTGCTTGTGATCACATACGCGATTGGGTTCTTGGGACACCCGAGGGAACATGGGTT TCCATGGGGGTGTATTCTGATGGATCTTATGGGATTCAACCTGGCCTTGTATATTCTTTCCCAGTTACCTGCGAGAAGGGCAAATGGTCCATTGTGCAGG GACTCAAGATTGACGATTTCTCGAGGGCGAAGATGGACGCAACAGCAAAAGAGCTTGTGGAGGAGAAATCGTTGGCCTATTCATGTCTCAATTGA
AA sequence Show only first row Show all	>Potri.002G141700.1 pacid=42777878 polypeptide=Potri.002G141700.1.p locus=Potri.002G141700 ID=Potri.002G141700.1.v4.1 annot-version=v4.1 MDHAVLLQKILVVSFIVALFWKIIRYMCNLLNVEKEPVRVLVTGAAGQIGYAIVPMIARGVMLGPDQPVILHLLDIEPAAEALNGVKMELIDAAFPLLKG VIATTDPIEACMGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAEDCKVLVIANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQI SESLDVQVSDVKNVIIWGNHSSTQYPDVNHATVQTSSGEKPVRELVSDDKWLNAEFITTVQQRGAAVIKARKLSSALSAASAACDHIRDWVLGTPEGTWV SMGVYSDGSYGIQPGLVYSFPVTCEKGKWSIVQGLKIDDFSRAKMDATAKELVEEKSLAYSCLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Potri.002G141700 [exp]	0	1
					Potri.019G038310 [exp]	1.00	0.9110
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Potri.011G167000 [exp]	1.73	0.8782	PtrAAP10
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.001G279500 [exp]	4.00	0.8628
AT3G57690		AGP23, ATAGP23	ARABINOGALACTAN-PROTEIN 23, ar...		Potri.006G056200 [exp]	7.07	0.8310
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.008G115100 [exp]	9.94	0.8366
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.010G174400 [exp]	10.19	0.8391
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.014G147700 [exp]	12.16	0.7577	Pt-ATB2.1
					Potri.005G134875 [exp]	12.48	0.7465
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Potri.007G080300 [exp]	14.14	0.7712
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.002G225400 [exp]	16.12	0.7699

Compare expression of checked genes

Potri.002G141700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.