Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04410 501 / 5e-180 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G43330 500 / 1e-179 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT5G56720 479 / 4e-171 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G58330 224 / 8e-70 lactate/malate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G141700 [exp] 527 / 0 AT1G04410 572 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.010G071000 [exp] 518 / 0 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G166800 [exp] 509 / 0 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G031700 [exp] 201 / 4e-61 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.017G101900 [exp] 71 / 2e-13 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G102000 [exp] 71 / 2e-13 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 68 / 2e-12 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011819 [exp] 513 / 0 AT5G43330 613 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021870 [exp] 507 / 0 AT5G43330 606 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10041144 [exp] 494 / 2e-173 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021184 [exp] 255 / 5e-85 AT5G43330 322 / 1e-111 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10038668 [exp] 215 / 8e-67 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10037935 [exp] 216 / 2e-65 AT5G58330 709 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10021183 [exp] 108 / 1e-29 AT1G04410 123 / 6e-36 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10019096 [exp] 64 / 5e-11 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10034458 [exp] 64 / 6e-11 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10020501 [exp] 57 / 5e-09 AT5G09660 482 / 2e-172 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00056 [poplar] [flax] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [poplar] [flax] LDH_C PF02866 [poplar] [flax] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G141900.1 pacid=42780164 polypeptide=Potri.002G141900.1.p locus=Potri.002G141900 ID=Potri.002G141900.1.v4.1 annot-version=v4.1 ATGCCAAAGGATGCTGTCAGGATTTTGGTTACTGGGGCTGCAGGGCAAATAGGCTATGCTCTTGCCCCAATGATTGCAAGAGGAATCATGTTAGGGCCAG ATCAGCCCGTAATCCTGCACTTACTTGACATTCAACCTGTTGCCGAGTCCTTGAAAGGGGTGAGAATGGAACTAATAGATGCTGCCTTCCCTCTTCTCCA AGGTATTCTCGCTACAACGGATGTCAATGAAGCTTGTAAAGGTGTTAACATTGCTGTTATGGTCGGTGGTTTTCCATGTAAGGAAGGAATGGAAAGGAGA GATGTGATGCATAAAAACGTACCAATCTTCAAGGCTCAAGCTTCAGCTTTAGAACAACACGCTGCTCCTGATTGCAAGATCCTGGTGGTTGCCAATCCTG CAAACACTAATGCACTCATTTTGAAAGAATTCGCCCCTTCAATCCCAGTTAAGAATATCACATGTCTTACTAGACTTGACCATAATCGAGCCCTAAGTCA CATCTCCGAGAGGCTAAATGTTGACGTTAGAGATGTAAAGAATGTAATCATATGGGGAAATCATTCTTCAACCCAATATCCAGATGCCAATTATGCCATT GCCACCACCGACATTGGAGAGAAGTCTGTCAGAGAACTTGTTGCTGATGATCATTGGATAGATTATGAGTACATCAATTCGGTGCGGGAACGTGGTGCTG AAATCATCAAAGCCCGGAAACTGTCAAGCGCATTGTCTGCTGCAAGTGCTGCTTGCGACCATGTACATGACTGGATTATTGGCACTGCCAAGGGAACTTG GGTTTCCATGGGAGTGTATTCTGATGGTTCTTATGGTATCCAACCTGACATCATCTACTCATTTCCTGTTACTTGCCAAAAAGGAGAATGGTCAATTGTG CAGGGTCTCAAGATTAATGAGTTCTCAAGAGAGAAGATGGATACAAGTATGAAAGAACTAACTAGAGAAGAGTCATTGGCTTATTCATGTCTCAATCAAA CATAA
AA sequence Show only first row Show all	>Potri.002G141900.1 pacid=42780164 polypeptide=Potri.002G141900.1.p locus=Potri.002G141900 ID=Potri.002G141900.1.v4.1 annot-version=v4.1 MPKDAVRILVTGAAGQIGYALAPMIARGIMLGPDQPVILHLLDIQPVAESLKGVRMELIDAAFPLLQGILATTDVNEACKGVNIAVMVGGFPCKEGMERR DVMHKNVPIFKAQASALEQHAAPDCKILVVANPANTNALILKEFAPSIPVKNITCLTRLDHNRALSHISERLNVDVRDVKNVIIWGNHSSTQYPDANYAI ATTDIGEKSVRELVADDHWIDYEYINSVRERGAEIIKARKLSSALSAASAACDHVHDWIIGTAKGTWVSMGVYSDGSYGIQPDIIYSFPVTCQKGEWSIV QGLKINEFSREKMDTSMKELTREESLAYSCLNQT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Potri.002G141900 [exp]	0	1
AT2G33690			Late embryogenesis abundant pr...		Potri.005G145200 [exp]	24.61	0.9213
					Potri.006G119250 [exp]	28.84	0.9163
AT4G13230			Late embryogenesis abundant pr...		Potri.002G252100 [exp]	36.16	0.9035
					Potri.006G190850 [exp]	42.33	0.8494
					Potri.008G146450 [exp]	44.11	0.8238
AT4G33820			Glycosyl hydrolase superfamily...		Potri.009G087600 [exp]	44.74	0.8182
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.011G040200 [exp]	51.61	0.8004
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.004G115500 [exp]	54.25	0.9729
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.006G249800 [exp]	62.16	0.9729
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.010G055800 [exp]	73.97	0.8173

Compare expression of checked genes

Potri.002G141900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.