Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02065 244 / 6e-79 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT3G60030 137 / 1e-35 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G20980 128 / 1e-32 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT2G33810 117 / 2e-32 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT2G47070 126 / 5e-32 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G53160 117 / 5e-32 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G69170 123 / 6e-32 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G43270 122 / 2e-31 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G76580 124 / 3e-31 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G57920 120 / 4e-31 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057700 [exp] 502 / 1e-180 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.003G172600 [exp] 134 / 2e-35 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.010G154000 [exp] 134 / 1e-34 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.014G057800 [exp] 130 / 1e-34 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.004G046700 [exp] 122 / 4e-34 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.002G142400 [exp] 129 / 5e-34 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.001G055900 [exp] 129 / 1e-33 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.018G149900 [exp] 129 / 1e-33 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.008G098600 [exp] 129 / 4e-33 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028181 [exp] 296 / 4e-99 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10042882 [exp] 285 / 1e-94 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10021614 [exp] 136 / 2e-36 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011356 [exp] 133 / 1e-35 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 130 / 1e-34 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 127 / 7e-34 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10006411 [exp] 127 / 2e-33 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10016275 [exp] 125 / 2e-33 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10007984 [exp] 128 / 3e-33 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10004523 [exp] 127 / 2e-32 AT3G60030 499 / 5e-163 squamosa promoter-binding protein-like 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [poplar] [flax] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Potri.002G142200.1 pacid=42778481 polypeptide=Potri.002G142200.1.p locus=Potri.002G142200 ID=Potri.002G142200.1.v4.1 annot-version=v4.1 ATGTTGGAGTACGAATGGGGAAACCCATCAACAATGATGCTATCAGGAGGCGATGAACAAGCTGCGACCAACCAAGAAGTACAGCACCTAAATCGTCAAG CCAACATTTTCGATCACTACACGCACTCTTTCAACGACAACCACCTCATCCCTCAACAAACCTCTTCGACCTTAATGTTTCAGAACCACCCCACTGCCAC CAACTCTGCACATCATAGTTTCAACTCTCTTTTCGACCCTCGCGCTTACACCGGTTCCGGTGCCTCCTCTTATTCCGCCAACGATACCTCCCTCCTTTCT CTTGACTCAATCCCAACAATCACATCAGTTGCAACTGCAACCCCTTATTTCCTTATACCAAAAGGCGAGGAAATTTCTCGGCCTTCTGATTTGATCACTT CAAGGATAGGACTGAATTTAGGGGGAAGAACTTATTTTTCTTCGGCTGAGGATGATTTTGTGAAGCGGCTATACCGCCGGTCTAGACCACTTGATCCCGG TTCTTCGTCAAATGCTTTAAGATGTCAAGCTGAAGGATGCAATGCTGATCTTACCCATGCTAAACACTACCATAGACGCCATAAAGTCTGTGAGTTTCAC TCTAAAGCTTCTACTGTCATCGCAGCCGGGTTGACCCAGCGATTCTGCCAGCAGTGTAGCAGGTTTCATATTCTCTCGGAATTTGATAATGGAAAGCGTA GTTGCAGAAAGAGATTGGCTGATCACAATCGTCGCAGGCGAAAATCACACCAAGTTAATCAAGAAAATCAGAGATCACAGCTAGAAAATGCTGCTAATCC CTCATCTGACATTCTCACAAGGTCTCCACTTGACTCTGGTGCTCACTCTACTTCATCGGCGACTACCGTAGCGATATCGCCACCTCGAATGTCTTTGGAT TGTTTCAAGCAAAGAGCATATCAAGCTACGGCTCCCTCTTTTACATCATCAAGCTCACCTTTTATCTCGAGAGGATAA
AA sequence Show only first row Show all	>Potri.002G142200.1 pacid=42778481 polypeptide=Potri.002G142200.1.p locus=Potri.002G142200 ID=Potri.002G142200.1.v4.1 annot-version=v4.1 MLEYEWGNPSTMMLSGGDEQAATNQEVQHLNRQANIFDHYTHSFNDNHLIPQQTSSTLMFQNHPTATNSAHHSFNSLFDPRAYTGSGASSYSANDTSLLS LDSIPTITSVATATPYFLIPKGEEISRPSDLITSRIGLNLGGRTYFSSAEDDFVKRLYRRSRPLDPGSSSNALRCQAEGCNADLTHAKHYHRRHKVCEFH SKASTVIAAGLTQRFCQQCSRFHILSEFDNGKRSCRKRLADHNRRRRKSHQVNQENQRSQLENAANPSSDILTRSPLDSGAHSTSSATTVAISPPRMSLD CFKQRAYQATAPSFTSSSSPFISRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Potri.002G142200 [exp]	0	1
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.004G037800 [exp]	3.16	0.6535
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	11.48	0.6096	PtrGrx20
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	15.74	0.6076
AT3G54000			unknown protein		Potri.016G105000 [exp]	15.81	0.6188
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	23.36	0.5792
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.016G110000 [exp]	27.71	0.5990
AT1G33055			unknown protein		Potri.001G452500 [exp]	27.74	0.6052
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	29.32	0.6222
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.005G225600 [exp]	39.50	0.6095
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Potri.010G131900 [exp]	42.89	0.5777

Compare expression of checked genes

Potri.002G142200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.