Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60520 138 / 4e-43 unknown protein AT1G02070 126 / 2e-38 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G058300 [exp] 258 / 2e-90 AT3G60520 134 / 2e-41 unknown protein Potri.005G158400 [exp] 60 / 6e-12 AT1G02070 57 / 8e-11 unknown protein Potri.005G173200 [exp] 40 / 0.0003 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028179 [exp] 118 / 3e-35 AT3G60520 113 / 2e-33 unknown protein Lus10042880 [exp] 91 / 2e-24 AT3G60520 80 / 5e-20 unknown protein Lus10009267 [exp] 57 / 9e-11 AT1G02070 59 / 3e-11 unknown protein Lus10015899 [exp] 57 / 2e-10 AT1G02070 58 / 9e-11 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF11715 [poplar] [flax] Nup160 Nucleoporin Nup120/160
Representative CDS sequence Show only first row Show all	>Potri.002G142600.1 pacid=42779031 polypeptide=Potri.002G142600.1.p locus=Potri.002G142600 ID=Potri.002G142600.1.v4.1 annot-version=v4.1 ATGGTGGATCTTCAAACTGTATGTTGCATGTGCGGCGATGTTGGTTTTCCTGACAAACTCTTCCGTTGCAACAAATGCCGCAACCGCTTTCAACACTCGT ATTGTAGCAACTACTACAGCGAATTTTCGGAGCCAATTGAACTGTGTGATTGGTGTCAAAGTGAAGAGAGAAATGCAAGACATGGAAACTCTTCGAAGAA ATCAGGAGCTGGACATGATGGTGGAATAGTAGTCACAAAACGATCAGAGTATACAGGTGATCACAAAATCAAACAACATGATCGTGAAGAGAATAGCACA ACCAGTAGTGATCAAAAGGGAAAGAACCCAAGTGGGATTCCTTCTCCAAGGCCTTCTACACGCAGGTATAAGCTTCTCAAGGATGTCATGTGTTAG
AA sequence Show only first row Show all	>Potri.002G142600.1 pacid=42779031 polypeptide=Potri.002G142600.1.p locus=Potri.002G142600 ID=Potri.002G142600.1.v4.1 annot-version=v4.1 MVDLQTVCCMCGDVGFPDKLFRCNKCRNRFQHSYCSNYYSEFSEPIELCDWCQSEERNARHGNSSKKSGAGHDGGIVVTKRSEYTGDHKIKQHDREENST TSSDQKGKNPSGIPSPRPSTRRYKLLKDVMC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60520			unknown protein		Potri.002G142600 [exp]	0	1
AT1G04200			unknown protein		Potri.010G081800 [exp]	8.66	0.7328
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.016G006900 [exp]	9.00	0.7565
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.010G169100 [exp]	12.32	0.7072
AT5G15120			Protein of unknown function (D...		Potri.013G064200 [exp]	17.66	0.7237
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017701 [exp]	18.97	0.7133
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	20.78	0.7008
AT4G17220		ATMAP70-5	microtubule-associated protein...		Potri.006G018000 [exp]	21.79	0.7299
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	24.37	0.7419
AT1G80650		RTL1	RNAse THREE-like protein 1 (.1...		Potri.003G179700 [exp]	25.37	0.6789
AT3G04090		SIP1A, SIP1;1	small and basic intrinsic prot...		Potri.013G053400 [exp]	25.69	0.7122	SIP1.3

Compare expression of checked genes

Potri.002G142600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.