Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60540 86 / 1e-23 Preprotein translocase Sec, Sec61-beta subunit protein (.1.2) AT2G45070 84 / 8e-23 SEC61 BETA, SEC61BETA SUPPRESSORS OF SECRETION-DEFECTIVE 61 BETA, Preprotein translocase Sec, Sec61-beta subunit protein (.1.2.3.4) AT5G60460 70 / 4e-17 Preprotein translocase Sec, Sec61-beta subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G059000 [exp] 93 / 2e-26 AT3G60540 81 / 7e-22 Preprotein translocase Sec, Sec61-beta subunit protein (.1.2) Potri.009G012000 [exp] 66 / 2e-15 AT5G60460 86 / 6e-23 Preprotein translocase Sec, Sec61-beta subunit protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011428 [exp] 91 / 7e-26 AT3G60540 105 / 8e-32 Preprotein translocase Sec, Sec61-beta subunit protein (.1.2) Lus10037570 [exp] 91 / 7e-26 AT3G60540 105 / 8e-32 Preprotein translocase Sec, Sec61-beta subunit protein (.1.2) Lus10025029 [exp] 88 / 1e-24 AT3G60540 107 / 2e-32 Preprotein translocase Sec, Sec61-beta subunit protein (.1.2) Lus10010009 [exp] 88 / 2e-24 AT3G60540 109 / 3e-33 Preprotein translocase Sec, Sec61-beta subunit protein (.1.2) Lus10036119 [exp] 66 / 2e-15 AT5G60460 108 / 6e-32 Preprotein translocase Sec, Sec61-beta subunit protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03911 [poplar] [flax] Sec61_beta Sec61beta family
Representative CDS sequence Show only first row Show all	>Potri.002G143100.2 pacid=42777084 polypeptide=Potri.002G143100.2.p locus=Potri.002G143100 ID=Potri.002G143100.2.v4.1 annot-version=v4.1 ATGGCTGTAGGCGGAACTGCTCCCCCAAGAGGAAGTGCAGCAGCAGCTGCAAGCATGCGCAGGAGGAGGACAGTCAGTGGTGGAGCTTCAGGAGGAGCAG GAGCAGCGGGGACTATGCTTCAGTTTTATACTGATGATGCGCCTGGACTTAAGATCTCTCCAAATGTTGTTCTTGTTATGAGCATTGGTTTCATTGCTTT TGTTGCTATTCTTCATGTTGTGGGCAAGCTTTACCTTGTTCGTAGGGAGGCTTAA
AA sequence Show only first row Show all	>Potri.002G143100.2 pacid=42777084 polypeptide=Potri.002G143100.2.p locus=Potri.002G143100 ID=Potri.002G143100.2.v4.1 annot-version=v4.1 MAVGGTAPPRGSAAAAASMRRRRTVSGGASGGAGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVVGKLYLVRREA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60540			Preprotein translocase Sec, Se...		Potri.002G143100 [exp]	0	1
AT5G07960			unknown protein		Potri.015G056300 [exp]	1.00	0.9390
AT3G12587			Oligosaccaryltransferase (.1)		Potri.008G053200 [exp]	1.41	0.9192
AT1G16810			unknown protein		Potri.010G253400 [exp]	2.64	0.8631
AT5G57460			unknown protein		Potri.006G168200 [exp]	3.16	0.8746
AT5G20090			Uncharacterised protein family...		Potri.012G095133 [exp]	3.46	0.8784
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	7.74	0.8485	Pt-SYP31.1
AT1G75560			zinc knuckle (CCHC-type) famil...		Potri.005G234700 [exp]	8.71	0.8154
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Potri.001G165600 [exp]	8.83	0.8813	Pt-SEC22.1
AT1G67250			Proteasome maturation factor U...		Potri.017G111900 [exp]	10.95	0.8525
AT1G76200			unknown protein		Potri.002G012700 [exp]	14.42	0.8498

Compare expression of checked genes

Potri.002G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.