Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00050 279 / 1e-89 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67110 92 / 3e-21 bHLH ALC, bHLH073 ALCATRAZ, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G09530 89 / 9e-19 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT4G36930 87 / 1e-18 bHLH SPT, bHLH024 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20180 85 / 1e-17 bHLH PIF1, PIL5, bHLH015 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) AT5G58010 77 / 2e-15 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT4G30980 77 / 3e-15 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 77 / 4e-15 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G61270 76 / 4e-15 bHLH PIF7, bHLH072 phytochrome-interacting factor7 (.1.2) AT4G28790 77 / 5e-15 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066500 [exp] 699 / 0 AT4G00050 303 / 5e-99 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G252800 [exp] 92 / 1e-19 AT2G20180 222 / 7e-66 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Potri.002G124400 [exp] 89 / 2e-19 AT4G36930 154 / 6e-44 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G025800 [exp] 89 / 3e-19 AT4G36930 148 / 1e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G139700 [exp] 86 / 4e-18 AT4G36930 171 / 2e-49 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G001300 [exp] 84 / 5e-17 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.005G001800 [exp] 84 / 6e-17 AT1G09530 247 / 3e-73 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.014G111400 [exp] 84 / 7e-17 AT2G46970 131 / 3e-33 phytochrome interacting factor 3-like 1 (.1) Potri.005G207200 [exp] 80 / 7e-16 AT2G43010 171 / 1e-47 phytochrome interacting factor 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028175 [exp] 227 / 1e-68 AT4G00050 232 / 2e-71 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042875 [exp] 114 / 2e-29 AT4G00050 105 / 7e-27 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003471 [exp] 94 / 9e-21 AT4G00050 129 / 8e-34 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10015734 [exp] 94 / 1e-20 AT4G00050 138 / 6e-37 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042874 [exp] 88 / 3e-20 AT4G00050 68 / 6e-14 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024811 [exp] 88 / 8e-19 AT4G36930 148 / 3e-41 SPATULA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011899 [exp] 84 / 5e-17 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10022833 [exp] 84 / 5e-17 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10029805 [exp] 83 / 8e-17 AT3G59060 163 / 7e-45 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) Lus10020727 [exp] 83 / 2e-16 AT2G30800 1223 / 0.0 helicase in vascular tissue and tapetum (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G143300.1 pacid=42778393 polypeptide=Potri.002G143300.1.p locus=Potri.002G143300 ID=Potri.002G143300.1.v4.1 annot-version=v4.1 ATGAGTCACCAGTGTGTTCCCAGCTGGGAACTTGATGATAATCCCACCACAGCTCCGAAGGTCTCACTTCGCTCCCACTCCAATTCAGGCGCACCATACA TGCCCATGTTAAACTACGAAGTAGCAGAGCTAACATGGGAGAACGGCCAGCTAGCCATGCACGGCCTAGGACAACCGCGCGTGCCAGCCAAACCAATAGC CTCCACTTCACCCTCCAAGTACACATGGGACAAGCCACGCGCCAGCGGCACCCTTGAATCCATAGTCAATCTAGCCACATGTATCCCTCAGTGCAATAAA CAAACTTTTGACAATAGTGGTTCAGACCATGACTTTGTGCCATGGTTTAACCACCATAGAGCTTCAGCCTCCGCCACAATGACTATGGACGCTTTGGTCC CTTGCTCGAAGCGGTCTGATCAAGAACGGACCACACGAGTGATAGACTCCAGCCCCGCCGGATTAGGCACTGATTGCGTGGTGGGATGCTCCACTCGCGT GGGGTCTTGCAGTGCCCCGACTGCCACGCAAAACGAGGTGGGTCTCCTCACCAGGAAACGTGAGAAGGTGGCGCGTGTCCCAGTCCCGGCTGAGTGGAGC AGAGACCAAAGCGTCAATCGTGGTGCCACGTTTAGCAAGAAGGACAGCCAGCAAGTGACGGTGGACAGTTGCGAGAGAGAGTTAGGTGTTGGGTTTACTT CCACCACTTCTTTCGGGTCGCAAGAAAACACCAGTTCTGGCACCAAGCCATGTACTAAAACCAACACAGCAGATGAGAATGACTCTGTTTGTCACAGCAG ACCACAGAGGGAGGCGGGTGACGAAGATGACAAGAAGAAAGGAAATGGGAAATCCTCAGTTTCTAATAGACGAAGCAGGGCTGCTGCTGTTCATAACCAA TCTGAACGTAAAAGGAGAGATAAGATAAACCAGAGGATGAAGACACTGCAGAAACTGGTCCCCAATTCCAGCAAGACGGACAAAGCCTCAATGCTTGATG AGGTGATTGAATATTTGAAACAACTGCAAGCACAAGTACAAATGGTGAGCAGAATGAATATGCAGCCAATGATGTTACCAATGGCTTTGCAACAGCAACT TCAGATGTCAATGATGGCCCCAATCAGCATGGGGATGGCTGGTATGGGAATGGGAATGGGAATGGGAATGGGAATGGGTGTTGTGGACATGAACACGCTT GCAGCTCGTTCCAACATTACAGGGGTTTCTCCAGTTCTTCACCCCACTGCTTTCATGCCCATGACCACATGGGATGGTTCTAATAGTCATGAACGCTTAC CAACTGCAGCTCCTTCAGCCACGGTAATGCCAGACCCACTGTCTGCATTCCTTGCGTGCCAATCACAGCCAATGACCATGGATGCTTACAGCAGGATGGC TTCAATGTACCAGCAGCTACATCAACAATCTCCTGCTTCTAATTCCAAGAGCTAA
AA sequence Show only first row Show all	>Potri.002G143300.1 pacid=42778393 polypeptide=Potri.002G143300.1.p locus=Potri.002G143300 ID=Potri.002G143300.1.v4.1 annot-version=v4.1 MSHQCVPSWELDDNPTTAPKVSLRSHSNSGAPYMPMLNYEVAELTWENGQLAMHGLGQPRVPAKPIASTSPSKYTWDKPRASGTLESIVNLATCIPQCNK QTFDNSGSDHDFVPWFNHHRASASATMTMDALVPCSKRSDQERTTRVIDSSPAGLGTDCVVGCSTRVGSCSAPTATQNEVGLLTRKREKVARVPVPAEWS RDQSVNRGATFSKKDSQQVTVDSCERELGVGFTSTTSFGSQENTSSGTKPCTKTNTADENDSVCHSRPQREAGDEDDKKKGNGKSSVSNRRSRAAAVHNQ SERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMVSRMNMQPMMLPMALQQQLQMSMMAPISMGMAGMGMGMGMGMGMGVVDMNTL AARSNITGVSPVLHPTAFMPMTTWDGSNSHERLPTAAPSATVMPDPLSAFLACQSQPMTMDAYSRMASMYQQLHQQSPASNSKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.014G066500 [exp]	1.00	0.9899
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	1.41	0.9826
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	1.73	0.9775	PtrcGR1,Pt-GR.3
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	4.47	0.9704	RBP29.2
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	4.47	0.9734
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	5.74	0.9692
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	6.48	0.9715	CYP97C4
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	6.70	0.9727
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	6.70	0.9704
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.014G025100 [exp]	8.48	0.9655

Compare expression of checked genes

Potri.002G143300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.