Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02040 124 / 1e-31 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 113 / 4e-28 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 99 / 3e-23 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G03510 89 / 1e-19 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G45120 86 / 2e-18 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G04390 84 / 1e-17 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G60580 81 / 8e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G19580 79 / 4e-16 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G10470 77 / 7e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G56200 76 / 1e-14 C2H2ZnF C2H2 type zinc finger transcription factor family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G066200 [exp] 705 / 0 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.004G205300 [exp] 103 / 3e-24 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G166200 [exp] 102 / 5e-24 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.008G032300 [exp] 99 / 5e-23 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 85 / 4e-18 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 81 / 9e-17 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.014G066100 [exp] 80 / 5e-16 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.002G143800 [exp] 80 / 5e-16 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.004G216900 [exp] 79 / 5e-16 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009775 [exp] 337 / 1e-110 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10024763 [exp] 333 / 5e-109 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10042872 [exp] 273 / 1e-86 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 272 / 3e-86 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10021637 [exp] 97 / 2e-21 AT1G02030 99 / 8e-23 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 85 / 1e-17 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 84 / 2e-17 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10023912 [exp] 79 / 2e-16 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 78 / 5e-16 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10033798 [exp] 76 / 2e-15 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G143600.1 pacid=42779351 polypeptide=Potri.002G143600.1.p locus=Potri.002G143600 ID=Potri.002G143600.1.v4.1 annot-version=v4.1 ATGGCTTTGCTTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAGATTTGCAAGAAAGGATTTATGTGTGGAAGAGCACTAGGAGGGCATATGAGGG CACATGGTATAGGTGACGAGAATGGCAACATCGATGATGAAGATCCTGCAAGTGATTGGGAAGATAAATTGGGAGCCAATGTGCCCCCAGGAACCAGCCG TATGTATGCTTTAAGAACGAATCCGAATCGATTAAAGAGTTGTCGGGTTTGTGAGAATTGTGGAAAAGAATTCTTGTCATGGAAGTCTTTTCTTGAACAT GGAAAATGCACGTCCGAGGATGCTGATCAATCACTTCTTTCGTCTCCAGGATCGGAAGAGGAGGATGGCACGCCAAGAAGGAGTTCCGGTTGGTCTAAAA GAAAACGATCATTGAGAGCTAAAGTGAGCAATTTGAACTTAAGCTGCCCATCAAGCGAAGATGAAGATCTTGCCAATTGCCTCATGATGTTATCTAATGC AACTACAGTTGATCCTTTAGAAACCGAGCCTGAGGAGTCTTGTGCATCGGCTAGTAAGGAAGAAGAGCGAAGAAATCCGACGAATTTTATGGCTCCTATG GAACATAAGCCACCATTGGAGAAAGCCAAGGGGACTGCTAAAGGAATGTTTGAATGCAAAGCATGCAAGAAAGTTTTCAATTCACATCAAGCATTAGGTG GACATAGAGCTAGTCACAAGAAGGTTAAAGGATGTTATGCATCCAGGCTCGATCAAAGCATGGATTATAGTCTAGCTGATCATGATGAAGATGTGGTCAC ACATGAAGAATTCTTTCCAGCTAAATTGACATCCACTTTGCAATTCGATCATGGTTCGACTCCTCCATTAATGGCTTCCACTTCAAAAAGGAAATCGAAA GTGCACGAATGCTCGATATGCCATCGTGTATTTTCATCAGGACAAGCATTAGGGGGTCATAAAAGGTGTCATTGGCTCACATCTAATACACCAGACACTT CATCTTTGCCCAAGTTCCATCAATTTCAGGACCACTTGGACCAAATTCAACAGCGACCAAAGTTCATCAACAATTCTGAGCAATTAGATCTCACACTTGA TCTCAATCTTCCTGTCCATCAAACAGTTACAAATCCTTCAAACATCGAAGTTTCTACTGAGATTTATTTACAACCTTGGACAGGAGTTGATGCAAAATTA AAGGATGACAACAATCATCAGCACCAAAACGAAGATCATCATGACGACAAAGACAACAATAACAACGATAATAATTATTACAGCACTTCAGTTCAGAATG TGGATGATGAAGCAGACAGTAAGTTGAAGTTAGCTAAACTTAGTGAATTAAAAGACATGCGCACTAGTGGAAGCTCATCTCCTTGGTTGCAGGTGGGGAT TGCTTCAACTACTGATTTGGGAACTGAAAAATTATAA
AA sequence Show only first row Show all	>Potri.002G143600.1 pacid=42779351 polypeptide=Potri.002G143600.1.p locus=Potri.002G143600 ID=Potri.002G143600.1.v4.1 annot-version=v4.1 MALLVDQQSNFKHFCKICKKGFMCGRALGGHMRAHGIGDENGNIDDEDPASDWEDKLGANVPPGTSRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEH GKCTSEDADQSLLSSPGSEEEDGTPRRSSGWSKRKRSLRAKVSNLNLSCPSSEDEDLANCLMMLSNATTVDPLETEPEESCASASKEEERRNPTNFMAPM EHKPPLEKAKGTAKGMFECKACKKVFNSHQALGGHRASHKKVKGCYASRLDQSMDYSLADHDEDVVTHEEFFPAKLTSTLQFDHGSTPPLMASTSKRKSK VHECSICHRVFSSGQALGGHKRCHWLTSNTPDTSSLPKFHQFQDHLDQIQQRPKFINNSEQLDLTLDLNLPVHQTVTNPSNIEVSTEIYLQPWTGVDAKL KDDNNHQHQNEDHHDDKDNNNNDNNYYSTSVQNVDDEADSKLKLAKLSELKDMRTSGSSSPWLQVGIASTTDLGTEKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	1.41	0.9468
AT1G19430			S-adenosyl-L-methionine-depend...		Potri.002G260600 [exp]	1.73	0.9163
AT5G20600			unknown protein		Potri.012G036500 [exp]	2.00	0.9161
AT4G33080			AGC (cAMP-dependent, cGMP-depe...		Potri.006G224800 [exp]	4.00	0.9209
AT4G21060			Galactosyltransferase family p...		Potri.016G013300 [exp]	5.83	0.8714
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	6.32	0.9115
AT5G42350			Galactose oxidase/kelch repeat...		Potri.002G007700 [exp]	11.48	0.8794
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	11.48	0.8987
AT4G00440			Protein of unknown function (D...		Potri.002G160000 [exp]	12.84	0.8732
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	13.41	0.8861

Compare expression of checked genes

Potri.002G143600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.