Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45130 275 / 2e-93 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT5G20150 221 / 5e-72 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT5G15330 204 / 1e-64 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G26660 202 / 3e-64 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT4G11810 56 / 1e-08 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT4G22990 52 / 2e-07 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT1G63010 46 / 2e-05 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT2G03240 44 / 0.0001 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G061400 [exp] 448 / 1e-161 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.018G131500 [exp] 214 / 6e-69 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.006G069500 [exp] 209 / 1e-66 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G028200 [exp] 198 / 1e-62 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.017G086600 [exp] 197 / 5e-62 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G135950 [exp] 191 / 5e-62 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.006G253400 [exp] 189 / 3e-59 AT5G20150 308 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G193200 [exp] 138 / 2e-40 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.003G120600 [exp] 54 / 3e-08 AT4G22990 1112 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030095 [exp] 220 / 2e-71 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10043272 [exp] 214 / 4e-69 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 201 / 1e-61 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10002018 [exp] 183 / 1e-56 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 181 / 5e-56 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10009314 [exp] 61 / 3e-10 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 57 / 7e-09 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10015852 [exp] 53 / 1e-07 AT4G22990 926 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.002G143900.1 pacid=42777985 polypeptide=Potri.002G143900.1.p locus=Potri.002G143900 ID=Potri.002G143900.1.v4.1 annot-version=v4.1 ATGAAGTTCGGTAAGAGATTGAAGCAACAAGTTCAAGAAACTTTGCCAGATTGGCGTGACAAGTTTTTGTCTTACAAGGAATTGAAGAAGCTTGTTCGTT TAATTTCATCGGCACCACCTTTCTTGAATGGATCGAGTGAATATGGAAAGTCGGAGGCTGAGTTTGTGCGTTTGCTGGATTGTGAAATCGACAAGTTCAA TGCTTTTTTCATGGAACAAGAAGAGGATTTCATTATCCGGCATGAGGAGTTAAAGCAGCGGATTCAGAAAGTGATTGATGCTTGGGGGCCCAGTGCAAGT CAGCCTTCAGAGGCAGAGTATAAAGAGGAGATGGGTAAGATTAGAAAAGACATCGTCAATTTCCATGGTGAGATGGTGCTTTTGGAGAATTACAGCAATA TCAATTACACAGGATTGGCCAAGATATTGAAAAAATATGACAAGCGAACTGGTGGATTACTGCGCCTTGCGTTCATTCAAAAGGTGTTGGAGCAACCTTT TTTCATCACCGATCTTGTGTCAAAGCTTGTCAAGCAATGCGAAAACATGATAGATGCAGTCTTCCCAGTAGAGGCAGAAGAAAAGGGAAAGGAAGGAAGA GAAACAATAACAGTCGCCGGAGAAGGAATTTTTAGGAACGCAATTGCAGCTCTAATGACCATGAAAGAAATTAGAAGAGGCAGCTCTACTTACAGTCATT TCTCTCTGCCTCCTCTCAACTTGCCAGACTCTGATCTGATCCCGTCATTCCAACTAAACTCTCCCATATCCATTGTCCGATAA
AA sequence Show only first row Show all	>Potri.002G143900.1 pacid=42777985 polypeptide=Potri.002G143900.1.p locus=Potri.002G143900 ID=Potri.002G143900.1.v4.1 annot-version=v4.1 MKFGKRLKQQVQETLPDWRDKFLSYKELKKLVRLISSAPPFLNGSSEYGKSEAEFVRLLDCEIDKFNAFFMEQEEDFIIRHEELKQRIQKVIDAWGPSAS QPSEAEYKEEMGKIRKDIVNFHGEMVLLENYSNINYTGLAKILKKYDKRTGGLLRLAFIQKVLEQPFFITDLVSKLVKQCENMIDAVFPVEAEEKGKEGR ETITVAGEGIFRNAIAALMTMKEIRRGSSTYSHFSLPPLNLPDSDLIPSFQLNSPISIVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.002G143900 [exp]	0	1
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G065400 [exp]	11.95	0.8323	GA20ox2-2
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Potri.010G179700 [exp]	49.29	0.7244	Pt-PNFT3.2
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	56.78	0.7476	FLS4,Pt-FLS.4
AT4G38960	CO		B-box type zinc finger family ...		Potri.007G015200 [exp]	61.25	0.7061
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.004G106800 [exp]	69.41	0.7017	Pt-SAMDC.3
AT1G15380		GLYI4	glyoxylase I 4, Lactoylglutath...		Potri.007G015100 [exp]	90.70	0.6835
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	97.57	0.6954
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	129.22	0.6630
AT1G68070			Zinc finger, C3HC4 type (RING ...		Potri.010G106300 [exp]	133.08	0.6873

Compare expression of checked genes

Potri.002G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.