Plant FIBer expression Database

Potri.002G144400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60650 47 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G060400
[exp]
183 / 3e-60 AT3G60650 48 / 1e-07 unknown protein
Potri.003G109500
[exp]
46 / 7e-07 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G144400.2 pacid=42778113 polypeptide=Potri.002G144400.2.p locus=Potri.002G144400 ID=Potri.002G144400.2.v4.1 annot-version=v4.1
ATGTCAGTGATCACATATCCTTGCTATTTTCTTCTTTCACTTTTATGCCTTTCTTTGCATGCATGTAACGCCAGACCACTTGCTGACATTAACAATAACC
CTGAGAAAAAATTTCACATAATTCCCTATCAGAATGATCAGAAGGAGATTTCGGTTACTACAGTACCCACAGTGGAGTCCTCTTCGTCAAATGAATTTGG
AGCAGCAAAAAAAGATAGCATTGCAAAGACTATAGGTGATAATATTGCTCAAAAGCTGAAGGACTCGAAAGCCAAACAGAAGTTGGACTCGGTCGATGAG
ATAGAGAAAAATCCAGGTGCTGTTAAAAAAGAGTCTCTTGTTTCAGTTTCTTGGCGTGTGCCTCAAAAGAAACGTGGTGAAAGACATCCTGGTTTCAACT
TGGATTATTCTCCACCAAAGACTCACCCTCCTTCCCATAACTGA
AA sequence
>Potri.002G144400.2 pacid=42778113 polypeptide=Potri.002G144400.2.p locus=Potri.002G144400 ID=Potri.002G144400.2.v4.1 annot-version=v4.1
MSVITYPCYFLLSLLCLSLHACNARPLADINNNPEKKFHIIPYQNDQKEISVTTVPTVESSSSNEFGAAKKDSIAKTIGDNIAQKLKDSKAKQKLDSVDE
IEKNPGAVKKESLVSVSWRVPQKKRGERHPGFNLDYSPPKTHPPSHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60650 unknown protein Potri.002G144400
[exp]
0 1
AT3G20190 Leucine-rich repeat protein ki... Potri.004G170274
[exp]
4.69 0.6749
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Potri.007G099000
[exp]
7.34 0.6164
AT5G10820 Major facilitator superfamily ... Potri.006G265500
[exp]
10.48 0.6011
AT3G15370 ATHEXPALPHA1.24... expansin 12 (.1) Potri.001G401700
[exp]
15.19 0.5617
AT5G58170 GDPDL7, SVL5 Glycerophosphodiester phosphod... Potri.006G187600
[exp]
18.70 0.5740
AT2G47270 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA... Potri.002G193300
[exp]
19.49 0.5639
AT4G34770 SAUR-like auxin-responsive pro... Potri.009G127400
[exp]
21.63 0.5214
AT4G08690 Sec14p-like phosphatidylinosit... Potri.005G168100
[exp]
22.80 0.5445
AT1G20300 Pentatricopeptide repeat (PPR)... Potri.005G245500
[exp]
28.61 0.4494
Potri.013G104501
[exp]
29.84 0.5101

Potri.002G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.