Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00170 313 / 4e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT3G60600 237 / 1e-78 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT2G45140 233 / 3e-77 PVA12 plant VAP homolog 12 (.1) AT1G51270 179 / 1e-53 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 167 / 1e-52 PapD-like superfamily protein (.1) AT5G47180 169 / 2e-52 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 149 / 1e-42 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2) AT5G54110 65 / 3e-12 ATMAMI membrane-associated mannitol-induced (.1) AT4G21450 62 / 3e-11 PapD-like superfamily protein (.1.2.3) AT4G05060 58 / 8e-10 PapD-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G060900 [exp] 261 / 1e-88 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.003G076100 [exp] 259 / 9e-88 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.001G152000 [exp] 255 / 4e-86 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 246 / 1e-82 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.003G082500 [exp] 152 / 1e-45 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.005G044900 [exp] 155 / 2e-45 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.013G031400 [exp] 154 / 7e-45 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.001G152100 [exp] 142 / 5e-42 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 136 / 2e-38 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010360 [exp] 341 / 5e-120 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10036495 [exp] 341 / 9e-120 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 244 / 6e-81 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10008512 [exp] 237 / 1e-78 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10028937 [exp] 239 / 1e-76 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10015885 [exp] 226 / 1e-74 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10009279 [exp] 228 / 2e-68 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10000591 [exp] 156 / 5e-47 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Lus10033837 [exp] 149 / 7e-42 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2) Lus10000031 [exp] 104 / 8e-29 AT3G60600 143 / 3e-44 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Potri.002G144800.1 pacid=42777349 polypeptide=Potri.002G144800.1.p locus=Potri.002G144800 ID=Potri.002G144800.1.v4.1 annot-version=v4.1 ATGAGCACTGGAGATCTTCTTAATATTCACCCAATAGAGCTTAAATTCCCATTTGAATTGAAGAAGCAGAGTTCATGTTCTATGCAATTAACTAACAAGT CAGATAAATATGTGGCTTTTAAGGTTAAAACAACCAATCCGAGGAAATACTGCGTTCGTCCCAACAGCGGCATTGTCATGCCCGGATCCACTTGCAGCGT TACAGTTACCATGCAAGCTCAAAAAGAGGCACCATCAGATATGCAATGCAAGGACAAGTTCCTACTTCAGAGTGTTGTTGCGCCTGATGGTACAACTACA AAAGGGATAACTTCTGAATTGTTTAATAAGGAGGGTGATAAGGTTGTGGAGGAGTTCAAATTGAGGGTTGTATATATCCCTGCAAATCCTCCCTCTCCTG TCCCAGAAGAGTCTGATGAAGGATCTTCTCCCCCTAGGCCTTCTGTGCTTGAGAATGGTAACCAGGATAGTTCATTACTTGATGCTGTATCCAGAACTTT GGAGGAACCTAAAGAGAAATCTTTTGAGACGTGGTCTCTGATTTCAAGGTTGACTGAGGAGAAAACTTCTGCCCTGCAGCAAAATCAGAAGCTTCAGCAT GAACTGGAACTGATGAGAAAACAAATTAGCAAAAAACATGCCGGGGGTTTCTCTTTATTGGTTGTATTTCTGGTTGGTTTGTTTGGCATCTTGGTTGGCT ATATCTTCAAGTGA
AA sequence Show only first row Show all	>Potri.002G144800.1 pacid=42777349 polypeptide=Potri.002G144800.1.p locus=Potri.002G144800 ID=Potri.002G144800.1.v4.1 annot-version=v4.1 MSTGDLLNIHPIELKFPFELKKQSSCSMQLTNKSDKYVAFKVKTTNPRKYCVRPNSGIVMPGSTCSVTVTMQAQKEAPSDMQCKDKFLLQSVVAPDGTTT KGITSELFNKEGDKVVEEFKLRVVYIPANPPSPVPEESDEGSSPPRPSVLENGNQDSSLLDAVSRTLEEPKEKSFETWSLISRLTEEKTSALQQNQKLQH ELELMRKQISKKHAGGFSLLVVFLVGLFGILVGYIFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00170			Plant VAMP (vesicle-associated...		Potri.002G144800 [exp]	0	1
AT4G29735			unknown protein		Potri.006G146800 [exp]	3.31	0.8115
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.008G172400 [exp]	5.00	0.7788	IAA12.1
AT3G24010		ATING1	ARABIDOPSIS THALIANA INHIBITOR...		Potri.003G174000 [exp]	5.19	0.7850
AT2G28370			Uncharacterised protein family...		Potri.009G014600 [exp]	10.67	0.7901
AT5G47890			NADH-ubiquinone oxidoreductase...		Potri.003G159100 [exp]	11.48	0.7755
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Potri.006G116500 [exp]	14.00	0.7841
					Potri.002G120500 [exp]	15.65	0.7727
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.017G054300 [exp]	20.49	0.7364
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	22.51	0.7370
AT4G27745			Yippee family putative zinc-bi...		Potri.012G019100 [exp]	23.87	0.6685

Compare expression of checked genes

Potri.002G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.