Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60670 251 / 5e-84 PLATZ transcription factor family protein (.1) AT2G12646 176 / 1e-54 PLATZ transcription factor family protein (.1) AT1G31040 173 / 1e-53 PLATZ transcription factor family protein (.1) AT1G32700 124 / 7e-35 PLATZ transcription factor family protein (.1.2) AT4G17900 122 / 8e-34 PLATZ transcription factor family protein (.1.2) AT1G21000 120 / 4e-33 PLATZ transcription factor family protein (.1.2) AT1G43000 117 / 2e-32 PLATZ transcription factor family protein (.1) AT1G76590 118 / 3e-32 PLATZ transcription factor family protein (.1) AT2G01818 114 / 5e-31 PLATZ transcription factor family protein (.1) AT5G46710 108 / 9e-29 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G059300 [exp] 405 / 4e-145 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.001G159200 [exp] 191 / 2e-60 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 190 / 2e-60 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 191 / 4e-60 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 189 / 1e-59 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.013G078500 [exp] 128 / 4e-36 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 126 / 5e-36 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 127 / 7e-36 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 125 / 3e-35 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015881 [exp] 284 / 4e-97 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 280 / 2e-95 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 171 / 2e-52 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 168 / 9e-51 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 164 / 1e-49 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 150 / 2e-44 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10036226 [exp] 138 / 2e-40 AT1G31040 191 / 3e-61 PLATZ transcription factor family protein (.1) Lus10000482 [exp] 130 / 7e-37 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 129 / 2e-36 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 128 / 5e-36 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [poplar] [flax] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Potri.002G144900.1 pacid=42779207 polypeptide=Potri.002G144900.1.p locus=Potri.002G144900 ID=Potri.002G144900.1.v4.1 annot-version=v4.1 ATGTTGGTTTCATCAAATCTATCACTACCTCCTTGGCTTCAAGCACTTCTTACAGAGAAATTCTTCAATGCTTGTGTAATTCACGAAGGAGCAAGAAAGA ATGAAAAGAACATATTTTGCTTGGACTGTTGCATCAGTATCTGCCCTCACTGTCTGTCTCCACACGGCTCTCACCGTCTCTTGCAGATAAGAAGATATGT ATATAATGATGTTTTAAGGGTAGATGATGCTCAGAAATTATTCGACTCTGCATTTGTTCAATCCTATACTACAAACAGTGCAAAAGTGATATTTTTAAAT CAAAGGCCACTAACAAGGCCAGTGAATATCAGAGGCAACATTTGTAGCAGGTGTGACAGAGGTCTGCAATTCCCTTATCTATTTTGCTCCATTTCTTGCA AGGTTGATCATATTTTGAGAACAGAAGGTGTAAGTGGGCTTTCAAGTTTCTTGTATGATTGTAAGTTCTTGCCTTTGTCTGAACCGCGTTCAGATGACGG CTTAATGACTCCAGTTTCGGTCCTTGAACCGGCCGCATCGAGCAAGACAAGTTCTAGTTCAGGCGGGGATGGTGGGGTTGCTTGCAGGGCTCTTGCCTGT ACTGCAACTACGGAGATTGTGAGAAAGAAAAGGAGTAGCTTGACAAATTCATGCCGGACGATGTTTCCAAGAGATACCGTAATATCGACCATTTTAATGA ACCGGAGAAAGAAGGCACCGAACCGGGCTCCTCTTTATTGA
AA sequence Show only first row Show all	>Potri.002G144900.1 pacid=42779207 polypeptide=Potri.002G144900.1.p locus=Potri.002G144900 ID=Potri.002G144900.1.v4.1 annot-version=v4.1 MLVSSNLSLPPWLQALLTEKFFNACVIHEGARKNEKNIFCLDCCISICPHCLSPHGSHRLLQIRRYVYNDVLRVDDAQKLFDSAFVQSYTTNSAKVIFLN QRPLTRPVNIRGNICSRCDRGLQFPYLFCSISCKVDHILRTEGVSGLSSFLYDCKFLPLSEPRSDDGLMTPVSVLEPAASSKTSSSSGGDGGVACRALAC TATTEIVRKKRSSLTNSCRTMFPRDTVISTILMNRRKKAPNRAPLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	0	1
AT1G74150			Galactose oxidase/kelch repeat...		Potri.013G008200 [exp]	2.23	0.7948
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024900 [exp]	4.24	0.7861
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Potri.005G230800 [exp]	4.58	0.7846
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.006G270401 [exp]	5.91	0.7606
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.011G011101 [exp]	8.83	0.7411
AT2G26510		PDE135	pigment defective embryo 135, ...		Potri.014G035800 [exp]	9.48	0.7446	PDE135.1
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.004G213300 [exp]	10.58	0.7812
AT1G17230			Leucine-rich receptor-like pro...		Potri.011G139700 [exp]	10.58	0.7550
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	10.58	0.7285	STM.2
AT4G27290			S-locus lectin protein kinase ...		Potri.010G015400 [exp]	12.32	0.7521

Compare expression of checked genes

Potri.002G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.