Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PE9.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45220 670 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 490 / 7e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 486 / 4e-167 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 473 / 3e-163 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G00190 440 / 6e-151 PME38, ATPME38 A. THALIANA PECTIN METHYLESTERASE 38, pectin methylesterase 38 (.1) AT3G49220 413 / 8e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 410 / 9e-138 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G59010 407 / 1e-137 PME61, PME35 pectin methylesterase 61 (.1) AT4G02320 407 / 2e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 388 / 1e-129 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G067100 [exp] 892 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 644 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 639 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 536 / 0 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 519 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 513 / 1e-178 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 508 / 6e-177 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 461 / 7e-158 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 433 / 1e-146 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 580 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 544 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 541 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 490 / 3e-170 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 458 / 4e-157 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 457 / 1e-156 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027203 [exp] 447 / 2e-152 AT5G51490 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031720 [exp] 441 / 4e-150 AT5G51490 546 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027204 [exp] 438 / 2e-147 AT5G51490 560 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 429 / 8e-146 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.002G145500.1 pacid=42779081 polypeptide=Potri.002G145500.1.p locus=Potri.002G145500 ID=Potri.002G145500.1.v4.1 annot-version=v4.1 ATGGCTGCTCGGATTGTGCTAACGTATTTTCTTGTGCCTTTTCTACTCTCCTCAACCATTGTGGGGTATAATTCCGATGAGGTAATGTCTTGGTGTAGCA AGACACCTAACCCACAACCATGTGAGTATTTTTTAAGCCATGACCATAGAAATACCCCCATTACACATGAGTCCGATTTTCTCAAAATCTCTATGCAACT AGCCTTAGACCGTGCCATGCAAGGTAAAGTCAACACTTATTCCCTAGGCTCGAAATGTAGAAATGGGCTTGAAAAGGCTGCATGGGAAGATTGCCTTGAG CTCTATGAAGACAGCATTCTTTGGCTCACCAAAACCACTAGCAGCAAGTGCACAGACTATGATGCACAAACATGGCTCAGCACGGCTCTAACCAACCTAG AAACGTGCCGAACCGGGTTCACTGAATTCGGGATGACTGACTTTATTTTGCCTTTGATGAGTAATAATGTGTCCAAGTTAATTAGCAACACTTTGGCTAT TAACAAGGTACCATACAGTGAACCTAGTTACAAAGAAGGGTTTCCTTCCTGGGTCAGACCTGGTGACCGGAAACTCTTGCAATCATCTTCACCAGCTTCT CAGGCAAACATTGTGGTGGCAACAGATGGGTCAGGGAACGTCAAGACCATCAAGGAGGCCATAGATGCGGCATCCAAAAGGTCAGGGTCAGGGAGGTATG TAATATATGTGAAAGCAGGGACATACAATGAAAACGTTGAGGTGGGAAAAAAGGTGAAGAATGTTATGTTTGTTGGTGACGGTATAGGGAAGACAATTGT CACCGGTAGCAAAAGCGCTGGAGGAGGTACTACAACTTTCAAGTCAGCTACTTTTGCCGTGGTCGGAGATAATTTTATTGCTCGGGACATGACATTTAGA AACACAGCTGGTGCCAAGAATCACCAGGCAGTTGCCTTGCGTTCGGGCTCCGATTTCTCAGTGTTCTACAAGTGCAGCTTTGAAGGATACCAGGACACTC TCTATGTCTATTCTCAGAGACAATTCTATAGAGAATGTGACATCTATGGTACCGTTGACTTCATATTTGGCAATGCTGCAGTTGTTTTCCAGAACTGTAA CATCTATGCTCGAAGCCCTCCAAACAAGATAATTACGATTACTGCTCAAGGTAGAACTGACCCTAACCAAAACACAGGAATCTCGATTCACAACTGTAGG GTTACTGCTGCTTCCGATCTAAAGCCGGTCCAAGGCTCCGTTAAGACATACCTTGGTAGGCCGTGGAAACAGTACTCGAGGACTGTTTTTATGAAAACCT TCCTTGATAGCTTGATTAACCCAGCTGGTTGGTCGCCATGGAATGGTAATTTTGCTCTCGATACTCTATATTATGGAGAATACATGAATACTGGCCCTGG ATCATCTACTGCCAATAGAGTTAATTGGAAAGGCTACCGCGTCATCACTAGTTCAACCGTAGCATCACAATTCACCGTGGGCAGCTTCATTTCCGGGAAT AATTGGTTGCCGGCCACCAACGTACCATTCACCGCCGGCCTTTAA
AA sequence Show only first row Show all	>Potri.002G145500.1 pacid=42779081 polypeptide=Potri.002G145500.1.p locus=Potri.002G145500 ID=Potri.002G145500.1.v4.1 annot-version=v4.1 MAARIVLTYFLVPFLLSSTIVGYNSDEVMSWCSKTPNPQPCEYFLSHDHRNTPITHESDFLKISMQLALDRAMQGKVNTYSLGSKCRNGLEKAAWEDCLE LYEDSILWLTKTTSSKCTDYDAQTWLSTALTNLETCRTGFTEFGMTDFILPLMSNNVSKLISNTLAINKVPYSEPSYKEGFPSWVRPGDRKLLQSSSPAS QANIVVATDGSGNVKTIKEAIDAASKRSGSGRYVIYVKAGTYNENVEVGKKVKNVMFVGDGIGKTIVTGSKSAGGGTTTFKSATFAVVGDNFIARDMTFR NTAGAKNHQAVALRSGSDFSVFYKCSFEGYQDTLYVYSQRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARSPPNKIITITAQGRTDPNQNTGISIHNCR VTAASDLKPVQGSVKTYLGRPWKQYSRTVFMKTFLDSLINPAGWSPWNGNFALDTLYYGEYMNTGPGSSTANRVNWKGYRVITSSTVASQFTVGSFISGN NWLPATNVPFTAGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	0	1	Pt-PE9.2
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Potri.004G090600 [exp]	1.41	0.9807
AT5G66420			unknown protein		Potri.005G120100 [exp]	2.00	0.9793
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139400 [exp]	2.44	0.9791
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179500 [exp]	3.46	0.9785
AT2G45220			Plant invertase/pectin methyle...		Potri.015G127700 [exp]	4.47	0.9745	Pt-PME.5
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.006G089700 [exp]	4.58	0.9734
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	4.89	0.9741	RAP21
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Potri.015G143400 [exp]	6.00	0.9676
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	6.32	0.9696
AT4G38470		STY46	serine/threonine/tyrosine kina...		Potri.005G246400 [exp]	7.48	0.9624

Compare expression of checked genes

Potri.002G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.