Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60730 448 / 2e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G23200 363 / 2e-121 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 335 / 1e-110 ATPMEPCRA methylesterase PCR A (.1) AT4G02330 333 / 1e-109 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 327 / 3e-107 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT5G51490 324 / 1e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 323 / 1e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 321 / 1e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 321 / 1e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 322 / 3e-105 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109400 [exp] 395 / 1e-134 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 362 / 1e-121 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 353 / 2e-118 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 349 / 9e-117 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 342 / 9e-114 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 340 / 3e-113 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 334 / 2e-110 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G135000 [exp] 332 / 2e-109 AT1G11580 560 / 0.0 methylesterase PCR A (.1) Potri.011G025400 [exp] 331 / 4e-109 AT1G11580 638 / 0.0 methylesterase PCR A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015877 [exp] 434 / 4e-150 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 381 / 4e-129 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 342 / 1e-113 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 334 / 2e-110 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 333 / 4e-109 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 326 / 3e-108 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 321 / 2e-105 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 320 / 9e-105 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10029868 [exp] 318 / 3e-104 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 317 / 6e-104 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.002G145700.1 pacid=42778559 polypeptide=Potri.002G145700.1.p locus=Potri.002G145700 ID=Potri.002G145700.1.v4.1 annot-version=v4.1 ATGTCTAGTGCTAGTACTGCCACCATTTTCCTCCTTCTGGTCATAGCAGCCACCACTACCTTTTGCCATCAAGAATTGGAGAAATCAGAAAACTTCCGAA GCCAAACTGATCAAGCTAGTGAAGCTCTAGCTTTCAATGTGAAGTCCGGTAAAGGGCTGAAAAGGAGAAAACCAAACGGGAAACTTCTGACATCATGGAA TCCAGCAAATTCGAAGGCGGACTACGTGGTGGCACAGGATGGCTCTGGTACACACAAAACAATCAATGATGCCCTTGCTGCACTTGACAAAACGGGTGGT AACCGGAGAAACCAAAGGGTGATAGTCTACGTTAAAGCAGGGGTGTACAATGAGAAAGTGGTAATTAAGAAAAACATGGAAAAATTGATGTTTGTGGGCG ATGGCATTGATAGAACCATTGTCACAGGCAACAGAAATGCTAAACGCGATGGATATGCCACGCACGAGACAGCTACATTCGGTGTACATGCAGATGGGTT TTGGGCTAGAGACATGACATTTGAAAACACAGCAGGCCCCGACGGACGCCAAGCAGTGGCACTAATGGTGAGTTCAGAGCAGTCGGTTGTTTATCGTTGT AGCTTCAAGGGTTACCAAAACACACTCTATGTACGATCCAAAAGGCAATTTTATCGCGACTGCCATATATATGGCACTATCGATTTCATATTTGGCAATG CTGCGGTGGTTTTGCAAAATTGCGACATCTTCGTAAGAAAACCAAATGAAAACCAAAAGAACGTGATAGTTGCACAGGGAAGAAAAGGCCCTGATGAAAA CACAGGGATTTCTATTCAAGGATCGCGTATTAGGCCGGCCCCGGATTTTATTGGCGTCAAAAACATCCCTACTTTCCTAGGCAGGCCATGGAGAAAGTAT TCCAGGACAGTGATTTTTGAGACGGACATTGATGGCTTTATTGATCCAGCAGGGTGGTTGCCATGGGACGGCAGTGTTCATCTTAATACATTGTTTTATG CAGAGTATAACAACATAGGCTGTGGTGCATCTACAGAACACAGGGCAAAATGGCCTGGCTTTCACGTGTTTAAAAGTTGGAAGGAGGCTAGCCCTTTTAC CGTGAATAAGTTCATAAAGGGGAGCTCATGGATTTCTCAGACAGGCGTGTCCTATAAGTTGGGAGTCTGA
AA sequence Show only first row Show all	>Potri.002G145700.1 pacid=42778559 polypeptide=Potri.002G145700.1.p locus=Potri.002G145700 ID=Potri.002G145700.1.v4.1 annot-version=v4.1 MSSASTATIFLLLVIAATTTFCHQELEKSENFRSQTDQASEALAFNVKSGKGLKRRKPNGKLLTSWNPANSKADYVVAQDGSGTHKTINDALAALDKTGG NRRNQRVIVYVKAGVYNEKVVIKKNMEKLMFVGDGIDRTIVTGNRNAKRDGYATHETATFGVHADGFWARDMTFENTAGPDGRQAVALMVSSEQSVVYRC SFKGYQNTLYVRSKRQFYRDCHIYGTIDFIFGNAAVVLQNCDIFVRKPNENQKNVIVAQGRKGPDENTGISIQGSRIRPAPDFIGVKNIPTFLGRPWRKY SRTVIFETDIDGFIDPAGWLPWDGSVHLNTLFYAEYNNIGCGASTEHRAKWPGFHVFKSWKEASPFTVNKFIKGSSWISQTGVSYKLGV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60730			Plant invertase/pectin methyle...		Potri.002G145700 [exp]	0	1
AT4G21740			unknown protein		Potri.001G371800 [exp]	3.74	0.8390
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.013G102600 [exp]	4.12	0.8428
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	8.12	0.8327
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	8.48	0.8132
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059300 [exp]	11.95	0.7930
AT5G45470			Protein of unknown function (D...		Potri.014G030400 [exp]	15.42	0.7744
AT5G06850			C2 calcium/lipid-binding plant...		Potri.016G049300 [exp]	17.08	0.8283
AT4G16790			hydroxyproline-rich glycoprote...		Potri.003G079900 [exp]	21.90	0.8146
AT2G44830			Protein kinase superfamily pro...		Potri.002G137700 [exp]	23.68	0.7969
AT3G12090		TET6	tetraspanin6 (.1)		Potri.010G220300 [exp]	29.46	0.8135

Compare expression of checked genes

Potri.002G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.