Plant FIBer expression Database

Potri.002G146100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02020 778 / 0 nitroreductase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030289
[exp]
795 / 0 AT1G02020 762 / 0.0 nitroreductase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0529 FMN-dep-NRtase PF00881 Nitroreductase Nitroreductase family
Representative CDS sequence
>Potri.002G146100.1 pacid=42777048 polypeptide=Potri.002G146100.1.p locus=Potri.002G146100 ID=Potri.002G146100.1.v4.1 annot-version=v4.1
ATGCCATCACTACACCTGCCTTCAAGGTTTTCTTCTCCATCGTTTCCTCTCATAAATCTCACCACCTCGAAAAGACCAATCTCCACCACCGCAATCACCA
TGTCCCTCTCATCTTCACCATCACCATCAATATCAAACAACCCCAAAGAACACAAAGACCCTGAAAACCTAATAGCCCAAGTCTTAAAATACCACAACCA
AACCAAACACTTCTTTACTAACTATGCTAGAGGCCCTCATGGTCTTGACTGGGCTAACCAACCTAATCCATTTAGACGTTACGTTTCTTCTCCACTTCTC
TCCCTCCTTCACTTCCCCGTTGAAAATAATCAAGATTCGACTTCTGTTTCTGCTCCTTTGTATCATTCTCTTTTCAATTCACTTCCATCTCCAAAACCCA
TTTCTAAATCCTCAATTTCTCAGTTGTTTTATGATTCTTTAGCCTTGTCTGCTTGGAAAACAACTGGCTTTTCTACCTGGTCTCTCAGGGTTAATCCCAG
TAGTGGCAATTTGCATCCCACAGAGGCTTATATTATTAGCCCAGCGGTTGATTCTGTTTGTGATTCTGCTTTTGTAGCACATTATGCACCAAAAGAGCAT
TCTTTGGAACTTAGAGCGAAAATTCCAGATACTTTTTTGCCTAGTTTTTTTCCAAGTAATGCTTTTTTGATAGGGGTTTCGTCCATTTTTTGGCGGGAGG
CGTGGAAATATGGAGAGAGGGCGTTTAGGTATTGTAATCATGATGTGGGTCATGCTATTGCTGCTATTTCATTGGCTGCAGCTGAGCTTGGTTGGGATGT
GAAGTTGCTTGATGGGTTAGGGTCTAAGGAGTTAGAGAGGCTAATGGGGCTCGGAATTTATCAGGGGTTTCGAATCCCGGATAAGCCAATTAAAGGTAAG
TTTCCTGAGATTGAATTTGAGCATCCAGATTGTGTGCTTGTTGTTTTTCCTAATGGTGTCAATGATTTTAATGTGAATTATAAGGAATTGAGCTTGGCGA
TAATGGAGTTTGGGAATTTAGAGTGGATAGGGAATCCGAATTCGCTTAGCAAAAAGCATGTTTGCTGGGATGTAATTTATTCAACTGCAGAAGCTGTTAA
AAAGCCCTTAAAGATAGATGATAGGTTTTTAGTTGATAAATTTCAGAGCAGTGGGGTTTGTAGTGAAGGGTCTTATAAGGGTTTTAGCGCTAGGGAAATT
ATTAGGAAGAGGAGGAGTGCGGTAGATATGGATGGAGTTACTAAAATTGAGAGAGATACATTTTATCAGATTATGTTGCATTGTCTTCCTTCTGGTTGTG
GAAGTGGAGAGAAGCAGAAGAGGCAATTGGCATTGCCATTTCGGGCACTTTCATGGGATGCGGAGGTGCATGCAGTTTTGTTTGTGCATAGAGTGGTTGG
GTTGCCTAAAGGGTTGTATTTCTTGGTGAGGAATGAAGATCACTTGGATGAGCTTAAGAAATCCACAAGGGCTGAGTTTAAGTGGGAGAAACCAGAGGGA
TGTCCTGTTGACTTGCCCTTGTATGAACTTGCTAGGAGTGATTGCCAGCAGATTGCTAAACAGCTCTCATGCCATCAGGACATTGCTAGTGATGGCTGCT
TCAGCCTTGGTATGGTGGCTCATTTTGAGCCTACTTTGCACAGCAAGGGTGCATGGATGTATCCTAGATTGTTTTGGGAGACTGGAGTTCTTGGCCAGGT
TTTGTACCTTGAAGCGCATGCAGTTGGCATTTCTGCTACTGGGATTGGTTGTTTCTTTGATGATCCTGTGCATGAAATTCTTGGATTAAGGGGATCAAAC
TTTCAGAGTCTGTATCACTTCACTGTTGGAGGCCCTGTCTTGGACAAGCGGATAATGAATCTGCCAGCTTATCCTGGCCCGAGCACTGATGCATGA
AA sequence
>Potri.002G146100.1 pacid=42777048 polypeptide=Potri.002G146100.1.p locus=Potri.002G146100 ID=Potri.002G146100.1.v4.1 annot-version=v4.1
MPSLHLPSRFSSPSFPLINLTTSKRPISTTAITMSLSSSPSPSISNNPKEHKDPENLIAQVLKYHNQTKHFFTNYARGPHGLDWANQPNPFRRYVSSPLL
SLLHFPVENNQDSTSVSAPLYHSLFNSLPSPKPISKSSISQLFYDSLALSAWKTTGFSTWSLRVNPSSGNLHPTEAYIISPAVDSVCDSAFVAHYAPKEH
SLELRAKIPDTFLPSFFPSNAFLIGVSSIFWREAWKYGERAFRYCNHDVGHAIAAISLAAAELGWDVKLLDGLGSKELERLMGLGIYQGFRIPDKPIKGK
FPEIEFEHPDCVLVVFPNGVNDFNVNYKELSLAIMEFGNLEWIGNPNSLSKKHVCWDVIYSTAEAVKKPLKIDDRFLVDKFQSSGVCSEGSYKGFSAREI
IRKRRSAVDMDGVTKIERDTFYQIMLHCLPSGCGSGEKQKRQLALPFRALSWDAEVHAVLFVHRVVGLPKGLYFLVRNEDHLDELKKSTRAEFKWEKPEG
CPVDLPLYELARSDCQQIAKQLSCHQDIASDGCFSLGMVAHFEPTLHSKGAWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEILGLRGSN
FQSLYHFTVGGPVLDKRIMNLPAYPGPSTDA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G02020 nitroreductase family protein ... Potri.002G146100
[exp]
0 1
AT5G15450 AtCLPB3, APG6, ... CASEIN LYTIC PROTEINASE B-P, A... Potri.017G090600
[exp]
1.41 0.9576
AT3G15350 Core-2/I-branching beta-1,6-N-... Potri.001G399500
[exp]
1.73 0.9271
AT4G24280 CPHSC70-1 chloroplast heat shock protein... Potri.004G224400
[exp]
2.44 0.9475 Pt-HSC70.1
Potri.010G111100
[exp]
4.24 0.8636
AT4G24280 CPHSC70-1 chloroplast heat shock protein... Potri.003G006300
[exp]
4.47 0.8982 HSC70.2
AT3G03750 SUVR3, SDG20 SET domain protein 20 (.1.2) Potri.013G064600
[exp]
4.89 0.8511 SDG935
AT2G28000 Cpn60alpha1, SL... SCHLEPPERLESS, chaperonin-60al... Potri.009G009300
[exp]
4.89 0.8732 SLP.1
AT3G13470 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn6... Potri.003G222400
[exp]
5.29 0.9081 Pt-LEN1.1
AT3G48070 RING/U-box superfamily protein... Potri.012G074500
[exp]
6.92 0.8637
AT1G13310 Endosomal targeting BRO1-like ... Potri.010G128700
[exp]
7.87 0.8162

Potri.002G146100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.