Plant FIBer expression Database

PAG1.4 (Potri.002G146200) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PAG1.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G08900 625 / 0 ARGAH1 arginine amidohydrolase 1, arginase (.1)
AT4G08870 576 / 0 ARGAH2 arginine amidohydrolase 2, Arginase/deacetylase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G067700
[exp]
656 / 0 AT4G08900 614 / 0.0 arginine amidohydrolase 1, arginase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000795
[exp]
643 / 0 AT4G08900 619 / 0.0 arginine amidohydrolase 1, arginase (.1)
Lus10030288
[exp]
639 / 0 AT4G08900 615 / 0.0 arginine amidohydrolase 1, arginase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0302 Arginase PF00491 Arginase Arginase family
Representative CDS sequence
>Potri.002G146200.1 pacid=42777254 polypeptide=Potri.002G146200.1.p locus=Potri.002G146200 ID=Potri.002G146200.1.v4.1 annot-version=v4.1
ATGTCAATTATAGGGAAGAGAGGGATTCATTACTTGCAAAAACTAAAAACTGCAAATATCTCTCCCGAATTGCTAGAAAAAGGCCAAAATCGCGTTATCG
ATGCTTCTCTCACGCTTATTCGCGAGCGTGCTAAGCTTAAGGGAGAGCTTTTGCGCGCATTAGGAGGTGTTAAAGCATCCACAACGCTTCTTGGAGTTCC
TTTGGGACACAATTCATCGTTTCTTCAAGGACCGGCGTTTGCTCCTCCGCGTATCAGGGAAGCGATTTGGTGTGGCAGCACGAATTCGAGCACGGAAGAA
GGTAAAGAATTAAATGATCCACGAGTGCTAACTGATGTTGGTGATGTTCCGGTTCAAGAAATTCGAGATTGTGGTGTGGATGATGATAGACTGATGAATG
TTATTAGTGAATCAGTCAAGCTCGTGATGGAAGAGGATCCATTGCGTCCGTTAGTCTTAGGTGGTGACCACTCAATATCTTTTCCTGTGGTTAGAGCTGT
CTCTGAGAAGCTTGGGGGTCCTGTAGATATTCTTCATCTAGATGCCCATCCTGACATCTATCATTGCTTTGAAGGAAATAAGTATTCTCATGCATCTTCG
TTTGCCCGAATTATGGAGGGTGGTTATGCTCGGCGGCTTTTGCAAGTGGGTATCAGATCAATAACAAAAGAAGGGCGTGAGCAAGGTAAACGTTTTGGAG
TAGAGCAATATGAAATGCGAACCTTCTCAAGGGATCGGCAGCAATTGGAAAATCTGAAACTAGGGGAAGGTGTAAAAGGTGTGTATATCTCGATAGATGT
GGACTGCCTTGATCCTGCCTTTGCTCCTGGCGTATCACATATTGAGCCAGGTGGTCTTTCTTTCCGTAATGTTCTCGACATTCTTCACAACCTTCAAGCT
GATGTTGTTGCGGCCGATGTGGTTGAATTCAATCCACAACGTGACACTGTTGATGGAATGACTGCAATGGTTGCTGCTAAGCTGGTGAGGGAACTGACTG
CAAAAATCTCAAAATGA
AA sequence
>Potri.002G146200.1 pacid=42777254 polypeptide=Potri.002G146200.1.p locus=Potri.002G146200 ID=Potri.002G146200.1.v4.1 annot-version=v4.1
MSIIGKRGIHYLQKLKTANISPELLEKGQNRVIDASLTLIRERAKLKGELLRALGGVKASTTLLGVPLGHNSSFLQGPAFAPPRIREAIWCGSTNSSTEE
GKELNDPRVLTDVGDVPVQEIRDCGVDDDRLMNVISESVKLVMEEDPLRPLVLGGDHSISFPVVRAVSEKLGGPVDILHLDAHPDIYHCFEGNKYSHASS
FARIMEGGYARRLLQVGIRSITKEGREQGKRFGVEQYEMRTFSRDRQQLENLKLGEGVKGVYISIDVDCLDPAFAPGVSHIEPGGLSFRNVLDILHNLQA
DVVAADVVEFNPQRDTVDGMTAMVAAKLVRELTAKISK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G08900 ARGAH1 arginine amidohydrolase 1, arg... Potri.002G146200
[exp]
0 1 PAG1.4
AT1G14030 Rubisco methyltransferase fami... Potri.008G090500
[exp]
7.61 0.9525 RBCMT.1
AT3G04310 unknown protein Potri.010G063300
[exp]
8.71 0.9424
AT4G02790 EMB3129 EMBRYO DEFECTIVE 3129, GTP-bin... Potri.005G209900
[exp]
12.48 0.9368
AT4G22720 Actin-like ATPase superfamily ... Potri.017G029200
[exp]
14.86 0.9277
AT2G22360 DNAJ heat shock family protein... Potri.007G094900
[exp]
15.32 0.9345
AT3G25480 Rhodanese/Cell cycle control p... Potri.002G239800
[exp]
19.28 0.9364
AT5G57930 APO2, EMB1629 embryo defective 1629, ACCUMUL... Potri.018G106400
[exp]
20.12 0.9291
AT3G55250 PDE329 PIGMENT DEFECTIVE 329, unknown... Potri.017G073000
[exp]
22.24 0.9280
AT4G02990 RUG2, BSM RUGOSA 2, BELAYA SMERT, Mitoch... Potri.014G137400
[exp]
24.33 0.8908
AT3G10350 P-loop containing nucleoside t... Potri.008G037100
[exp]
26.19 0.8992

Potri.002G146200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.