Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45290 1180 / 0 Transketolase (.1) AT3G60750 1165 / 0 Transketolase (.1.2) AT4G15560 44 / 0.0004 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068200 [exp] 1298 / 0 AT2G45290 1174 / 0.0 Transketolase (.1) Potri.010G224600 [exp] 691 / 0 AT3G60750 764 / 0.0 Transketolase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031708 [exp] 1177 / 0 AT3G60750 1255 / 0.0 Transketolase (.1.2) Lus10000789 [exp] 1070 / 0 AT2G45290 1106 / 0.0 Transketolase (.1) Lus10030283 [exp] 1062 / 0 AT2G45290 1121 / 0.0 Transketolase (.1) Lus10031128 [exp] 1043 / 0 AT2G45290 1130 / 0.0 Transketolase (.1) Lus10004750 [exp] 1026 / 0 AT2G45290 1054 / 0.0 Transketolase (.1) Lus10007839 [exp] 72 / 2e-14 AT3G60750 84 / 1e-19 Transketolase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF00456 [poplar] [flax] Transketolase_N Transketolase, thiamine diphosphate binding domain CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [poplar] [flax] TKC_like PF02780 [poplar] [flax] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G146300.1 pacid=42779042 polypeptide=Potri.002G146300.1.p locus=Potri.002G146300 ID=Potri.002G146300.1.v4.1 annot-version=v4.1 ATGGCTTCCACTTCTTCTCTAACTCTCTCTCAAGCCCTTTTGGCTAGAGCCGTCTCTCACAATGCCATTGACAACCTCCGTGACAGCCGTCTCTCTCTCG TCTCCCTTCCTGCTTTCTCCGGCCTCAAATCCACCACCTGTACAGCCACACGCGCCACAACAACAACTAGCCGCCGCCGCCGCGTGTCTTCCCGACAAGT AAGGGCGGCGGCAGTGGAGACACTGGATGCGACAACAGAGACTTCATTGGTGGAGAAGTCGGTTAATACGATTAGATTTCTCGCTATTGATGCTGTCGAA AAGGCTAATTCAGGTCACCCTGGTTTGCCTATGGGGTGTGCTCCGATGGGTCATATTTTGTACGATGAGGTCATGAGGTACAATCCGAAGAACCCATATT GGTTCAATCGTGACCGGTTTGTTTTGTCTGCTGGCCATGGCTGTATGTTGCAATATGCTCTGCTTCACCTTGCTGGATATGATAGTGTCAAGGAAGAAGA CTTGAAGAGTTTCCGCCAGTGGGGAAGCAGGACACCTGGACATCCTGAGAACTTTGAGACTCCTGGTGTTGAAGTCACAACTGGTCCTCTTGGACAGGGT ATTGCCAATGCTGTTGGTTTGGCACTTGCAGAGAAGCACTTGGCTGCTCGCTACAACAAACCAGACAATGAGATTGTTGACCACTACACATATGTTATAT TGGGAGATGGTTGTCAAATGGAGGGTATTTCAAACGAGGCTTGTTCGTTGGCCGCACACTGGGGACTTGGAAAGCTGATTGCTTTCTATGATGACAACCA TATCTCTATTGATGGTGACACTGAGATTGCATTCACTGAGGATGTTGACAAACGTTTTGAGGGTCTTGGGTGGCATGTTATCTGGGTGAAGAATGGAAAC ACTGGATATGATGAGATTCGTGCTGCCATTAAGGAGGCTAAGTCTGTGAAGGACAAACCCACTTTGATAAAGGTGACTACAACCATTGGTTATGGATCTC CAAACAAAGCAAACTCTTACAGTGTACATGGGAGTGCATTGGGTGCCAAGGAAGTTGATGCTACCAGGCAGAACCTTGGATGGCCATATGAGCCTTTCCA TGTTCCAGAGGATGTTAAGCAGCACTGGAGCCGCCACACCCCAGCTGGTGCAGCTTTTGAAGCCGAATGGAATGCCAAGTTTGCCGAGTATGAGAAGAAG TACAGTGAAGAAGCTGCAGAGTTGAAGTCTATTGCCAATGGTGAACTGCCTGCTGGTTGGGAGAAAGCACTTCCTACATATACTCCGGAGAGCCCAGCAG ATGCCACCAGAAATCTATCTCAGCAAAACCTAAATGCACTTGCAAAAGTGCTCCCTGGTCTTCTTGGTGGCAGCGCAGATCTTGCCTCTTCCAACATGAC CTTGTTAAAAATGTTTGGGGACTTCCAAAAGGACACCCCTGAGGAACGCAATGTCAGGTTTGGTGTCAGAGAGCATGGAATGGGAGCCATCTGCAATGGC ATTGCACTTCACTGTCCTGGCTTGATCCCCTACTGTGCTACTTTCTTTGTTTTCACAGATTACATGAGAGCTGCTATGAGGATTTCTGCTTTGAGTGAGG CTGGAGTCATATATGTCATGACCCATGATTCCATTGGTCTTGGAGAGGATGGACCAACCCATCAACCAATTGAGCACTTGGCAAGCTTCCGTGCAATGCC CAACATTTTGATGTTACGCCCAGCTGATGGAAATGAAACTGCTGGCGCATACAAGGTTGCTGTCCTCAACAGAAAGAGACCCTCTATCCTAGCCCTCTCC AGGCAAAAGCTACCCCAACTTCCTGGAACCTCCATTGAGGGAGTTGAAAAGGGTGGCTACATCATTTCAGATAACTCCTCTAGTAATAAGCCTGATGTTA TCTTGATTGGTACTGGTTCAGAGCTGGAAATTGCTGCTAAAGCTGCCGAGGAACTTAGAAAGGAAGGCAAGGCTGTAAGAGTTGTTTCCTTTGTTTCATG GGAGCTTTTTGATGAACAATCAGATGCCTACAAGGAAAGTGTTTTGCCAGCAGCTGTAGAAGCTAGGGTTAGCATCGAAGCTGGATCAACATTTGGATGG GAGAAGATTGTTGGAGACAAAGGAAAGGCTATTGGAATTGACCGGTTTGGAGCAAGTGCACCAGCAGGTAAAATATACAAGGAGTACGGTATTACTACAG AGGCTGTTATCGCAGCTGCCAAAGAAGTCAGCTAG
AA sequence Show only first row Show all	>Potri.002G146300.1 pacid=42779042 polypeptide=Potri.002G146300.1.p locus=Potri.002G146300 ID=Potri.002G146300.1.v4.1 annot-version=v4.1 MASTSSLTLSQALLARAVSHNAIDNLRDSRLSLVSLPAFSGLKSTTCTATRATTTTSRRRRVSSRQVRAAAVETLDATTETSLVEKSVNTIRFLAIDAVE KANSGHPGLPMGCAPMGHILYDEVMRYNPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKSFRQWGSRTPGHPENFETPGVEVTTGPLGQG IANAVGLALAEKHLAARYNKPDNEIVDHYTYVILGDGCQMEGISNEACSLAAHWGLGKLIAFYDDNHISIDGDTEIAFTEDVDKRFEGLGWHVIWVKNGN TGYDEIRAAIKEAKSVKDKPTLIKVTTTIGYGSPNKANSYSVHGSALGAKEVDATRQNLGWPYEPFHVPEDVKQHWSRHTPAGAAFEAEWNAKFAEYEKK YSEEAAELKSIANGELPAGWEKALPTYTPESPADATRNLSQQNLNALAKVLPGLLGGSADLASSNMTLLKMFGDFQKDTPEERNVRFGVREHGMGAICNG IALHCPGLIPYCATFFVFTDYMRAAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALS RQKLPQLPGTSIEGVEKGGYIISDNSSSNKPDVILIGTGSELEIAAKAAEELRKEGKAVRVVSFVSWELFDEQSDAYKESVLPAAVEARVSIEAGSTFGW EKIVGDKGKAIGIDRFGASAPAGKIYKEYGITTEAVIAAAKEVS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45290			Transketolase (.1)		Potri.002G146300 [exp]	0	1
AT4G01310			Ribosomal L5P family protein (...		Potri.002G154600 [exp]	3.87	0.9727
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G068300 [exp]	4.24	0.9693
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Potri.010G210000 [exp]	7.48	0.9629
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G003800 [exp]	9.32	0.9689
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Potri.009G163200 [exp]	10.00	0.9680
AT2G42690			alpha/beta-Hydrolases superfam...		Potri.003G101800 [exp]	10.58	0.9594
AT2G30570		PSBW	photosystem II reaction center...		Potri.005G218800 [exp]	10.95	0.9684
AT4G15510			Photosystem II reaction center...		Potri.005G010700 [exp]	13.63	0.9636
AT2G01918		PQL3	PsbQ-like 3 (.1)		Potri.017G129700 [exp]	13.78	0.9584
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Potri.003G052500 [exp]	14.69	0.9627	Pt-PSAH.1

Compare expression of checked genes

Potri.002G146300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.