Plant FIBer expression Database

Potri.002G146400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45300 790 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
AT1G48860 765 / 0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G068300
[exp]
720 / 0 AT2G45300 642 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000788
[exp]
801 / 0 AT2G45300 816 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
Lus10030282
[exp]
745 / 0 AT2G45300 757 / 0.0 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0290 EPT_RTPC PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Representative CDS sequence
>Potri.002G146400.1 pacid=42778228 polypeptide=Potri.002G146400.1.p locus=Potri.002G146400 ID=Potri.002G146400.1.v4.1 annot-version=v4.1
ATGGCTCAAGTGAGCAAAATCAGCAATGGAGCACAAAACACCTACACAACAATCCATCTTTTAAAACCCCAAATACCCAAATCTTTGTCTTCAATTTCAT
TTAGATCACAGCTCATTAAAGGGTCTTCTTTTGGTTTGAAGCAATGTAAAAAAATGGGTAGTTGCAAGCTAAAGGTTGAACCTTTGAAGGTTTTAGCTTC
AATTGCTACAGCAGAGAAGCCATCAACTGTACCTGAGATCGTTTTGCAACCCATCAAAGATATTTCTGGTACTGTTACTTTACCGGGTTCCAAGTCTCTG
TCAAATCGGATACTCCTTCTTGCTGCTCTCTCTGAGGGTACGACTGTTGTTGACAATTTGTTGAATAGTGATGATGTTCATTACATGCTTGGCGCGCTAA
GAACACTTGGCCTACATGTGGAAGATAATAAGAAACTCAAACAAGCAATTGTAGAAGGATGTGGTGGCCAGTTTCCTGTGGGAAAAGAAGCAAATGTTGA
TGTTGAACTTTTCCTTGGAAATGCTGGAACAGCAATGCGTCCATTGACAGCTGCTGTAACTGCTGCAGGTGGAAATTCAAGCTATATACTTGATGGGGTG
CCACGAATGAGGGAGAGACCAATTGGTGATTTGGTTATTGGTCTTCAGCAGCTTGGTGCAGATGTTTCTTGTTCTCCTACAAACTGCCCCCCTGTTCGCA
TAAATGCAAATGGGGGCCTTCCAGGGGGAAAGGTTAAACTCTCTGGATCTATAAGTAGTCAATACTTGACTGCTTTGCTCATGGCAGCTCCTTTAGCTCT
TGGAGATGTGGAAATTGAGATCGTTGACAAATTGATTTCTGTTCCATATGTTGAGATGACTCTGAAGTTGATGGAGCGCTATGGAGTCTTTGTAGAACAC
AGTGATAACTGGGATCGTTTCTTTGTTCGAGGAGGTCAAAAGTACAAGTCTCCTAAAAATTCTTTTGTTGAGGGCGATGCTTCAAGTGCCAGTTACTTCC
TAGCTGGTGCAGCAATCACTGGTGGGACCATCACTGTCGAAGGTTGTGGGATGGATAGTTTGCAGGGAGATGTAAAGTTTGCAGAGGTTCTTGAGAAAAT
GGGAGCCAAAGTTACTTGGACAAAGAACAGTGTTACTGTCACTGGACCGCCACGAGATTCTTCTGGTCAGAAACACTTGCGTGCTGTCGATGTAAACATG
AACAAAATGCCAGATGTTGCTATGACTCTGGCTGTTGTTGCGCTTTTCGCTGATGGTCCTACTGCCATAAGAGATGTGGCAAGTTGGAGAGTGAAAGAAA
CAGAACGGATGATTGCTATTTGCACAGAACTAAGGAAGTTGGGAGCAACAGTTGAAGAAGGACCAGATTACTGTGTGATCACTCCACCTGAGAAACTAAA
TGTGACAGAGATTGACACTTATGATGATCACAGGATGGCAATGGCATTCTCTCTTGCTGCTTGTGGAGAAGTCCAAGTCACCATCAAGGACCCTGGTTGC
ACTCGAAAAACTTTCCCAGACTACTTTGAGGTTCTTGAGAGGTACACAAAGCATTGA
AA sequence
>Potri.002G146400.1 pacid=42778228 polypeptide=Potri.002G146400.1.p locus=Potri.002G146400 ID=Potri.002G146400.1.v4.1 annot-version=v4.1
MAQVSKISNGAQNTYTTIHLLKPQIPKSLSSISFRSQLIKGSSFGLKQCKKMGSCKLKVEPLKVLASIATAEKPSTVPEIVLQPIKDISGTVTLPGSKSL
SNRILLLAALSEGTTVVDNLLNSDDVHYMLGALRTLGLHVEDNKKLKQAIVEGCGGQFPVGKEANVDVELFLGNAGTAMRPLTAAVTAAGGNSSYILDGV
PRMRERPIGDLVIGLQQLGADVSCSPTNCPPVRINANGGLPGGKVKLSGSISSQYLTALLMAAPLALGDVEIEIVDKLISVPYVEMTLKLMERYGVFVEH
SDNWDRFFVRGGQKYKSPKNSFVEGDASSASYFLAGAAITGGTITVEGCGMDSLQGDVKFAEVLEKMGAKVTWTKNSVTVTGPPRDSSGQKHLRAVDVNM
NKMPDVAMTLAVVALFADGPTAIRDVASWRVKETERMIAICTELRKLGATVEEGPDYCVITPPEKLNVTEIDTYDDHRMAMAFSLAACGEVQVTIKDPGC
TRKTFPDYFEVLERYTKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45300 RNA 3'-terminal phosphate cycl... Potri.002G146400
[exp]
0 1
AT1G52760 LysoPL2 lysophospholipase 2 (.1) Potri.003G059200
[exp]
1.00 0.9253
AT2G32720 B5 #4, B5#4, AT... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.002G242500
[exp]
4.24 0.9235
AT3G17390 MAT4, SAMS3, MT... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.013G004100
[exp]
8.12 0.8825 AdoMet_e2,Pt-SAMS.1
AT3G17390 MAT4, SAMS3, MT... S-ADENOSYLMETHIONINE SYNTHETAS... Potri.008G099300
[exp]
9.00 0.8839 AdoMet1,SAMS.2
AT3G51780 ATBAG4 BCL-2-associated athanogene 4 ... Potri.009G074300
[exp]
9.79 0.8923
AT4G01850 AtSAM2, SAM-2, ... S-adenosylmethionine synthetas... Potri.014G114700
[exp]
10.00 0.8992 Pt-SAM1.1
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Potri.012G006400
[exp]
10.39 0.9084 OMT1.1
AT2G30490 REF3, CYP73A5, ... REDUCED EPRDERMAL FLUORESCENCE... Potri.019G130700
[exp]
12.36 0.8737 C4H1,Pt-CYP73.3
AT5G26780 SHM2 serine hydroxymethyltransferas... Potri.002G109200
[exp]
16.12 0.8934 SHMT3
AT4G14420 HR-like lesion-inducing protei... Potri.008G165200
[exp]
16.70 0.7503

Potri.002G146400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.