Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02000 724 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 720 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 669 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT4G12250 597 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G30440 573 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT3G23820 566 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G23920 95 / 2e-21 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 91 / 4e-20 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT3G14790 91 / 3e-19 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G30620 89 / 3e-19 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068400 [exp] 801 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.001G320000 [exp] 587 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.017G059100 [exp] 577 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 566 / 0 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.018G100400 [exp] 559 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.006G178500 [exp] 553 / 0 AT4G30440 757 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.012G128200 [exp] 551 / 0 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G116750 [exp] 235 / 9e-77 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.003G123700 [exp] 95 / 2e-21 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030281 [exp] 726 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10000787 [exp] 706 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 698 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 667 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10008893 [exp] 577 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 573 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10022552 [exp] 555 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 555 / 0 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Lus10016640 [exp] 553 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10031127 [exp] 528 / 0 AT4G00110 574 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.002G146500.1 pacid=42777631 polypeptide=Potri.002G146500.1.p locus=Potri.002G146500 ID=Potri.002G146500.1.v4.1 annot-version=v4.1 ATGTCTCATCTTGATCACACCCCGTCAACACCAGGCAAATTCAAGATTGACAAATCACCATATTATTCAAGAACAAGGTGGCATTCCTCTGTAGCCAAAC TTACTCTCTGGTCTTCTCTCTTTGTTGCCTTAATCTTTCTCTTCTTTTATCGCTCCCCATCTTCTTCATCAAACAACCCTCCATCCTCCGATCCATCACG CCGCTATCTTGCTTCCGCTAATTGGGGCGGAGCTGCTTGGGAAAAGCGGGTCCGGACATCTGCCCGAATCCGGTCTCGAAATGGGTTCTCTGTTTTAGTC ACAGGAGCAGCTGGTTTTGTTGGAACCCATGTTTCTTCTGCCCTTAAACGCCGCGGAGATGGTGTTCTGGGGATTGATAATTTCAATGATTACTACGATC CAACTTTGAAGAGAGCAAGACAAGCACTTCTTGAAAGGAGTGGTGTTTTTATTGTGGAAGGAGATATAAATGATGTTGCTTTGTTGAAGAAATTGTTTGA CATTGTGCCTTTTACTCATGTTATGCATTTGGCAGCTCAAGCTGGTGTTAGGTATGCAATGCAAAATCCTGGCTCTTATGTGCATAGTAATATTGCTGGT TTTGTTAGTTTGTTAGAAGTTTGTAAAGATGCAAATCCACAACCAGCTATTGTTTGGGCATCATCTAGTTCTGTTTATGGGCTTAATACTAAAGTGCCTT TCTCTGAGAAAGATAGGACTGATCAACCTGCTAGTTTATACGCTGCTACTAAGAAAGCTGGTGAGGAAATTGCACACACTTACAATCATATTTACGGACT TTCCCTTACTGGATTGCGATTTTTTACGGTCTTTGGACCCTGGGGGAGGCCGGATATGGCATATTTCTTTTTTACCAAGGATATTTTGAAGGGGAAGAGT ATTCCGATTTTTGAGGCTGCGAATCATGGGACAGTTGCTAGGGATTTTACCTACATTGATGATATTGTGAAGGGTTGTTTGGGTTCGTTGGATACAGCAG AGAAGAGTACCGGGAGTGGAGGGAAGAAGAAAGGGCCGGCACAATTGAGGGTTTTCAATTTGGGGAATACATCTCCTGTGCCAGTTACCGATCTTGTTAG TATTTTGGAAAGGCTTTTGAAGGTTAAGGCTAAAAGGAATGTTATGAAGTTGCCACGCAACGGGGATGTTCCATATACACACGCAAATATTAGTTATGCT CAGAAGGAATTTGGATATAAGCCTACCACGGATCTGCAGACAGGGTTGAAGAAATTTGTGCGGTGGTACCTCAGTTACTATGGAGACAAGAAGGCTGTTG CAAGATGA
AA sequence Show only first row Show all	>Potri.002G146500.1 pacid=42777631 polypeptide=Potri.002G146500.1.p locus=Potri.002G146500 ID=Potri.002G146500.1.v4.1 annot-version=v4.1 MSHLDHTPSTPGKFKIDKSPYYSRTRWHSSVAKLTLWSSLFVALIFLFFYRSPSSSSNNPPSSDPSRRYLASANWGGAAWEKRVRTSARIRSRNGFSVLV TGAAGFVGTHVSSALKRRGDGVLGIDNFNDYYDPTLKRARQALLERSGVFIVEGDINDVALLKKLFDIVPFTHVMHLAAQAGVRYAMQNPGSYVHSNIAG FVSLLEVCKDANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVFGPWGRPDMAYFFFTKDILKGKS IPIFEAANHGTVARDFTYIDDIVKGCLGSLDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNVMKLPRNGDVPYTHANISYA QKEFGYKPTTDLQTGLKKFVRWYLSYYGDKKAVAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Potri.002G146500 [exp]	0	1
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	2.00	0.9297
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	3.46	0.9250
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.004G228400 [exp]	6.32	0.9054	Pt-DH1.1
AT5G02010		ATROPGEF7, ROPG...	RHO guanyl-nucleotide exchange...		Potri.016G104400 [exp]	7.34	0.9107
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G095100 [exp]	10.00	0.9128
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	10.90	0.9096
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	11.48	0.9046
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	12.00	0.8961
AT4G14960		TUA6	Tubulin/FtsZ family protein (....		Potri.001G289500 [exp]	12.24	0.9188	TUA2.1
AT2G40070			unknown protein		Potri.008G066900 [exp]	12.48	0.8775

Compare expression of checked genes

Potri.002G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.