Plant FIBer expression Database

Potri.002G146675 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G146675.1 pacid=42778922 polypeptide=Potri.002G146675.1.p locus=Potri.002G146675 ID=Potri.002G146675.1.v4.1 annot-version=v4.1
ATGTTGGTGATCAACGGTACATCCAGCGTCACCAATGATGGACAACGGGCGGCAGAGATCATAAGCCTTTATTTTGGTGATGAACAGTTATCTCATTCTC
GCAGAGCGATGCCCTTCAACCCGCGAGATCACCGTTATTCTCAGTCTCAGTCAATGATGATGACCAGCAGGCAGAACGGAGCAGTCGTGTCCTTTGTCAA
TGGACTTACGGATGGAACCGTTACCGGCCCTGTTAAACCTTTATTCCAGGAGATAACTAAAGATGTTTATCGCACAGAAGCCAAAATAGTCGACATGGTA
ACACAAGCATATGCGAAATTCTTAAACCACATCAATTTTTGTTCATTGAAGAACCATTATCATGCAAGAGTGTCCTTAAGGCTTGATGAAGCACTACCAA
GATCTTTAGATTTACCGACGGAATTTTCCGTCGGTATTTGCACTACCATTCCGTTGGTAAAAAATTAA
AA sequence
>Potri.002G146675.1 pacid=42778922 polypeptide=Potri.002G146675.1.p locus=Potri.002G146675 ID=Potri.002G146675.1.v4.1 annot-version=v4.1
MLVINGTSSVTNDGQRAAEIISLYFGDEQLSHSRRAMPFNPRDHRYSQSQSMMMTSRQNGAVVSFVNGLTDGTVTGPVKPLFQEITKDVYRTEAKIVDMV
TQAYAKFLNHINFCSLKNHYHARVSLRLDEALPRSLDLPTEFSVGICTTIPLVKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G146675
[exp]
0 1
AT1G30820 CTP synthase family protein (.... Potri.003G157900
[exp]
10.00 0.7326
AT3G46510 ATPUB13 ARABIDOPSIS THALIANA PLANT U-B... Potri.001G238500
[exp]
33.98 0.7413
AT4G26270 PFK3 phosphofructokinase 3 (.1) Potri.006G235132
[exp]
39.15 0.7376
AT5G18020 SAUR-like auxin-responsive pro... Potri.004G166300
[exp]
54.08 0.7086
AT3G49800 BSD domain-containing protein ... Potri.014G008400
[exp]
80.79 0.7093
AT4G29210 GGT4, GGT3 gamma-glutamyl transpeptidase ... Potri.018G069450
[exp]
94.89 0.6546
Potri.019G016702
[exp]
142.40 0.6682
AT5G28680 ANX2 ANXUR2, Malectin/receptor-like... Potri.005G055200
[exp]
149.50 0.6643
AT2G30240 ATCHX13 CATION/H+ EXCHANGER 13, Cation... Potri.010G182751
[exp]
152.26 0.6334
AT4G33180 alpha/beta-Hydrolases superfam... Potri.006G219400
[exp]
235.96 0.6452

Potri.002G146675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.