Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45340 809 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G51560 765 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G22730 663 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G25560 222 / 1e-63 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G62710 218 / 3e-62 Leucine-rich repeat protein kinase family protein (.1) AT1G60800 218 / 4e-62 NIK3 NSP-interacting kinase 3 (.1) AT5G07280 223 / 2e-61 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G45780 208 / 1e-58 Leucine-rich repeat protein kinase family protein (.1) AT5G01890 209 / 3e-57 Leucine-rich receptor-like protein kinase family protein (.1) AT2G23950 205 / 3e-57 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G068700 [exp] 1156 / 0 AT2G45340 831 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G130100 [exp] 841 / 0 AT5G51560 940 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G128700 [exp] 803 / 0 AT5G51560 906 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G117800 [exp] 749 / 0 AT4G22730 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G115100 [exp] 742 / 0 AT4G22730 788 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G091000 [exp] 234 / 8e-66 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G108000 [exp] 224 / 2e-64 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.019G058600 [exp] 228 / 7e-64 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G110300 [exp] 220 / 9e-63 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004032 [exp] 773 / 0 AT2G45340 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031123 [exp] 736 / 0 AT5G51560 855 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031703 [exp] 732 / 0 AT5G51560 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004333 [exp] 659 / 0 AT4G22730 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030279 [exp] 656 / 0 AT2G45340 648 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028916 [exp] 639 / 0 AT4G22730 749 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030898 [exp] 226 / 4e-65 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10036672 [exp] 224 / 1e-64 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030591 [exp] 225 / 2e-64 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10033104 [exp] 211 / 2e-59 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G147000.1 pacid=42778778 polypeptide=Potri.002G147000.1.p locus=Potri.002G147000 ID=Potri.002G147000.1.v4.1 annot-version=v4.1 ATGCATCTCTTCTTCTATCTCCTTCTCCTCTCCCTCTCCCTCTCTCAAACTCTCGCTTCACCAACAGAACTTGAACTCCTAATGCAAATCAAGGCTTCTT TAGACCCGCAAAACAGGTTGTTGACATCATGGGAGCCCAACAAAGACCCGTGTAGTGGTGCCTTCGAAGGTGTGGCATGTAATGAACAAGGCCACGTGGC TAACATTTCCCTCCAAGGGAAGGGTCTTTCAGGCCAAATACCAGCAGCTTTAGGTGGCCTAAAGAGTTTGAGTGGCCTGTTCTTGCATTTTAATGCATTG AATGGAGCGATACCAAAAGAGATCGCTGAGTTGAGTGAACTCAGTGACTTGTATCTCAATGTTAACAATTTGTCTGGAGAGATTCCACCCCAGATTGGTA ACATGTCTAATCTTCAAGTTTTGCAGCTTTGCTACAATAAGTTGGCTGGGAGTATACCAACACAACTGGGATCTCTGGAGAAGCTCAGTGTCCTTGCTCT GCAATATAATCAACTAACTGGTGCAATTCCTGCGAGCTTGGGGGATTTGGAGTTCTTGTCAACGTTGGTTTTGAGCTTTAATGGCCTTTTTGGTCCGATA CCTGTAAAATTAGCTAGAGCTCCTCTGCTAAAAACTCTAGACATTCGTAACAATAGTCTCTCCGGGAATGTACCTCCAGCTTTGAAGAGGCTAACTACTG GATTTCAATATGGAAACAACCCTGACTTATGTGGCGTTGGGTTTTCTAACCTTGAAACATGTGTGACTTCTGATCCTAATAAACCTGAACCTTCCAAACC TAATGTTGCTTTGCCAAAGGACATCCCAGAGTCTGCAAACCCTTCTAATTGCAGTAAAAGTGACTGTTCACATCTGACAAAAACCCCAAGATATGGTATC ATATTCGGGGTGATTGGAGTTTTCATTGCAATGTCTGTCTCCGGGTTTCTGATGTTTTCATGGTACCGTCGCCATAAACAGAAAATTGGAAGTGCTTCTG ACACTTTGGATAGCCGTCTTAGCACTGACCAGGCCAAGGAGGTTTACAGGAAGAGTGTCTCCCCGCTTATTAGCCTAGAATATTCCAATGGGTGGGACCC CTTGGCCATTGATCGAAGCAAAAGTGGGTTTTCTCAAGAAGTTCTTGAGAGCTTCATGTTTAATTTAGAAGAGGTGGAGCGTGCAACTCAGTGCTTCTCG GAGGTGAATTTGTTGGGGAAGAGTAATTTCTCAGCTACCTACAAAGGGATCCTGAGAGATGGGTCAGTTGTTGCTATAAAGTGCATCACCAAAACAAGTT GCAAGTCTGATGAAGCTGATTTTTTGAAGGGGTTGAAGATATTGACCTCGCTGAAACATGAAAATCTGGTGAGATTGAGAGGTTTCTGCTGCTCAAAAGG AAGAGGGGAGTGTTTCCTCATCTATGATTTTGTTCCCAATGGAAATTTGGTGCAGTATCTTGATGTAAAGGATGGTAGTGGGAAGGTTCTTGAATGGTCG GCTAGAATTTCTATCATAAATGGCATTGCTACAGGTATTGCGTACTTGCATGGAAGTAAAGGAAATAAACATGCTCTAGTTCATCAGAATATATCGGCTG AGAAAGTGTTCATCAACAGACCGTATGATCCCTTGATCTCAGATTCAGGCCTGCACAAACTCCTTGCGGATGACATTGTCTTCTCCATGCTCAAAGCCAG TGCTGCCATGGGATATTTGGCTCCTGAATACACAACCACTGGCCGTTTCACAGAAAAGAGTGATGTTTATGCATTTGGCATGATTGTACTTCAAATCCTC AGTGGAAAACGTAACATCACCCAGTTGACTCTCCACGCAGCTGAGTCATGCAGGTATGAAGATTTTATTGATGCAAATCTTGGAGGAAACTTCTCAGAAT CAGAGGCAGACAAGCTTGGAAGAATAGCCCTTCGTTGCACTAATGAATCTCCTATTCACAGGCCAACCGCGGAAACTGTGATGCTAGAACTAAGCGAATC TATTGTCGCTGCTTAA
AA sequence Show only first row Show all	>Potri.002G147000.1 pacid=42778778 polypeptide=Potri.002G147000.1.p locus=Potri.002G147000 ID=Potri.002G147000.1.v4.1 annot-version=v4.1 MHLFFYLLLLSLSLSQTLASPTELELLMQIKASLDPQNRLLTSWEPNKDPCSGAFEGVACNEQGHVANISLQGKGLSGQIPAALGGLKSLSGLFLHFNAL NGAIPKEIAELSELSDLYLNVNNLSGEIPPQIGNMSNLQVLQLCYNKLAGSIPTQLGSLEKLSVLALQYNQLTGAIPASLGDLEFLSTLVLSFNGLFGPI PVKLARAPLLKTLDIRNNSLSGNVPPALKRLTTGFQYGNNPDLCGVGFSNLETCVTSDPNKPEPSKPNVALPKDIPESANPSNCSKSDCSHLTKTPRYGI IFGVIGVFIAMSVSGFLMFSWYRRHKQKIGSASDTLDSRLSTDQAKEVYRKSVSPLISLEYSNGWDPLAIDRSKSGFSQEVLESFMFNLEEVERATQCFS EVNLLGKSNFSATYKGILRDGSVVAIKCITKTSCKSDEADFLKGLKILTSLKHENLVRLRGFCCSKGRGECFLIYDFVPNGNLVQYLDVKDGSGKVLEWS ARISIINGIATGIAYLHGSKGNKHALVHQNISAEKVFINRPYDPLISDSGLHKLLADDIVFSMLKASAAMGYLAPEYTTTGRFTEKSDVYAFGMIVLQIL SGKRNITQLTLHAAESCRYEDFIDANLGGNFSESEADKLGRIALRCTNESPIHRPTAETVMLELSESIVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	0	1
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	2.82	0.9260	MYB61.2
AT4G29340		PRF4	profilin 4 (.1)		Potri.003G047700 [exp]	2.82	0.9051	Pt-PRO1.2
AT2G30890			Cytochrome b561/ferric reducta...		Potri.002G057900 [exp]	3.16	0.9306
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	4.47	0.9165
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	4.89	0.9243
AT3G56750			unknown protein		Potri.006G040400 [exp]	6.92	0.9087
AT3G06840			unknown protein		Potri.001G162100 [exp]	8.36	0.9152
					Potri.012G048001 [exp]	9.94	0.8859
AT2G45040			Matrixin family protein (.1)		Potri.014G058200 [exp]	16.09	0.9074
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	17.74	0.8807

Compare expression of checked genes

Potri.002G147000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.