Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) AT4G22750 325 / 1e-111 DHHC-type zinc finger family protein (.1.2) AT4G22753 309 / 1e-101 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G00840 259 / 6e-86 DHHC-type zinc finger family protein (.1) AT3G09320 100 / 1e-24 DHHC-type zinc finger family protein (.1) AT5G04270 99 / 3e-24 DHHC-type zinc finger family protein (.1) AT3G26935 89 / 1e-19 DHHC-type zinc finger family protein (.1) AT4G24630 81 / 5e-17 DHHC-type zinc finger family protein (.1) AT5G41060 79 / 3e-16 DHHC-type zinc finger family protein (.1.2) AT5G50020 76 / 4e-15 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069200 [exp] 516 / 0 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 390 / 3e-137 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 376 / 2e-131 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.014G104000 [exp] 278 / 5e-93 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 105 / 2e-26 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 100 / 2e-24 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 99 / 4e-24 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 86 / 1e-18 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 84 / 7e-18 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024561 [exp] 371 / 3e-129 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10032199 [exp] 370 / 8e-129 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10002694 [exp] 253 / 1e-82 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 211 / 1e-67 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2) Lus10009291 [exp] 172 / 3e-53 AT3G60800 202 / 3e-65 DHHC-type zinc finger family protein (.1) Lus10030211 [exp] 117 / 3e-32 AT4G00840 159 / 5e-49 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 108 / 2e-27 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 104 / 7e-26 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 102 / 2e-25 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 87 / 7e-19 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G147300.2 pacid=42777304 polypeptide=Potri.002G147300.2.p locus=Potri.002G147300 ID=Potri.002G147300.2.v4.1 annot-version=v4.1 ATGCATAGATCTAGAGCTGTTATGGCTTGGAATGTGTTCAAGTTTTGTACGGCCTTAAGGGGTTTAGGCTCGATCATGATCTTGTTGGTGCTCGGTGTTG TTGTCGTCACATATTATGCTGTTGTTTTGAATAATTATGGCCCTGCTTTATATGATGGTGACATTGATTCTCTCGTTTCTCTTGCTGTCTTGATCACATT CCATTCTTTGCTAGTGATGCTATTATGGAGCTACTTCTCTGTTGTTTTAACTGATCCTGGTAGTGTGCCTCCTAATTGGAGGCCTGCTATTGATGAGGAA AGAGGGGAGGCCGATCCATTGAATGGGTCGGAATGTAGTGGAGTGCAGTCTGACCAATTAAATCAAAGAATCCGGTATTGCAGGAAGTGCAACCAGCTGA AACCACCTCGTTGCCATCATTGTTCTGTCTGTGGGAGGTGTGTGCTAAAGATGGACCATCATTGTGTATGGGTTGTAAATTGTGTTGGGGCCTTAAATTA TAAGTATTTCCTTCTATTTTTGTTCTATACATTTCTTGAGACAAGTCTTGTAACTTTATCTCTTCTACCACACTTTATAGCATTCTTTAGTGATGGAGAA ATTCCTGGCACTCCAGGCACTCTTGCAACCACATTTCTTGCCTTTGTCTTAAATCTGGCATTTGCATTGAGTGTTCTGGGATTTCTGATCATGCACATAT CTCTGGTATCTGCCAATACAACAACTATTGAGGCATATGAGAAGAAGACCACCCCAAAATGGCGCTATGACCTTGGTCGAAAGAAGAATTTTGAGCAGGT GTTTGGAGCAGATAAGCGATACTGGTTCATTCCAGCTTATTCAGATGAAGATACAAGGCGAATGCCTGCACTTCAGGGTCTTGAATATCCATCAAAACCT GATTTTGATTCCCAAGAATTCTAG
AA sequence Show only first row Show all	>Potri.002G147300.2 pacid=42777304 polypeptide=Potri.002G147300.2.p locus=Potri.002G147300 ID=Potri.002G147300.2.v4.1 annot-version=v4.1 MHRSRAVMAWNVFKFCTALRGLGSIMILLVLGVVVVTYYAVVLNNYGPALYDGDIDSLVSLAVLITFHSLLVMLLWSYFSVVLTDPGSVPPNWRPAIDEE RGEADPLNGSECSGVQSDQLNQRIRYCRKCNQLKPPRCHHCSVCGRCVLKMDHHCVWVVNCVGALNYKYFLLFLFYTFLETSLVTLSLLPHFIAFFSDGE IPGTPGTLATTFLAFVLNLAFALSVLGFLIMHISLVSANTTTIEAYEKKTTPKWRYDLGRKKNFEQVFGADKRYWFIPAYSDEDTRRMPALQGLEYPSKP DFDSQEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60800			DHHC-type zinc finger family p...		Potri.002G147300 [exp]	0	1
AT2G35140			DCD (Development and Cell Deat...		Potri.015G122300 [exp]	1.00	0.8787
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	2.82	0.8542
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	3.16	0.8384
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	3.46	0.8397	APGM.2
AT4G38870			F-box and associated interacti...		Potri.008G144000 [exp]	6.92	0.7885
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	7.34	0.8367
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Potri.009G053900 [exp]	7.74	0.8458
					Potri.001G400401 [exp]	8.00	0.8283
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	12.64	0.7905
AT3G02970		EXL6	EXORDIUM like 6 (.1)		Potri.013G080100 [exp]	14.73	0.7812

Compare expression of checked genes

Potri.002G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.