Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 345 / 5e-118 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 278 / 1e-91 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 238 / 1e-76 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G61720 206 / 6e-64 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 187 / 7e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 185 / 7e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G66800 182 / 3e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 180 / 4e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 179 / 1e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 177 / 3e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G147602 [exp] 665 / 0 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 457 / 7e-163 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 452 / 5e-161 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 449 / 1e-159 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 442 / 6e-157 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 442 / 7e-157 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 405 / 4e-142 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 404 / 6e-142 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 399 / 9e-140 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004028 [exp] 324 / 3e-110 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 298 / 9e-100 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 283 / 5e-94 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004029 [exp] 282 / 1e-93 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 229 / 8e-73 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10008668 [exp] 200 / 7e-62 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 196 / 2e-60 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10009955 [exp] 184 / 7e-56 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039595 [exp] 184 / 1e-55 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 181 / 2e-54 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G147600.1 pacid=42776847 polypeptide=Potri.002G147600.1.p locus=Potri.002G147600 ID=Potri.002G147600.1.v4.1 annot-version=v4.1 ATGGGAGAAGGAAAAGGCTTGGTCTGTGTAACTGGTGGAGCTGGTTTTGTTGCTTCATGGCTGATAATGAGGCTTCTTGAACATGGTTACACTGTCAGAA CCACAATTAGATCTAGCCCAGGAATTAGCAAAGACATAAGCTACCTCACAAACCTAGCAAGAGCGGCAGAGAAACTGCAAATCTTTAACGCAGATCTTGA CGATCCAGACAGTTTCAATGAGGCCATTGAGGGATGCATGGGAGTCTTTCATCTCGCGTTCCCCCTTGACTTCGCTGATAGAGAACCAGAAGAAGTGATC ACCAAAAGAGCTGTTGATGGCACTCTAGGGGTTTTGAGAGCATGTGTAAATGCAAAGACAGTGAAGAGAGTTGTCTGTGCTTCTAGTCAAGCCACAGTTA TATATAGTGGTGATGGTGATGAGAAGGTGGTTGATGAGAGTTCGTGGACCAACATAGATTATTATAGAAGCCTAAATCGTTTTGGCACTTCCTACTTGGT TGCTAAGAATAAGACTGAAAGGGCAGCTCTTGATTTTGCTGAGCAATATGGATTGGATCTTGTGTTCTTGATTCCTCCACTAATTGTCGGTCCTTTCATA TGCCCTCGCATCCCTGAATCGGTCCGATGGTCGCTATCTTTGATTTTTGGTGAGAAACGATTGTATCATCTCCTTATCAAGCTAAATGTGGTGCACACAG ATGATGTAGCCAGGGCGTATATATTCCTGCTCGAATTCCCTCATGCAAAAGGAAGGTATATTTGTTCATGGGAAGAAATATCCATCGATGAGATGTCTGA ATTTCTTTCCGCTAGATACCCAGAATTTCAGATTCCCACGAAAGATTCCTTGAAGGACATTAAAGGATTCAAAATGCGTGGCCTCTCACCCAAGAAGCTC TTGGATTGTGGATTCAAATTTGAGCACGGTCTTGAAGACATGTTTGATGGGGCAATTCAATCATGCAAGGAGAAGGGATTTCTTTAG
AA sequence Show only first row Show all	>Potri.002G147600.1 pacid=42776847 polypeptide=Potri.002G147600.1.p locus=Potri.002G147600 ID=Potri.002G147600.1.v4.1 annot-version=v4.1 MGEGKGLVCVTGGAGFVASWLIMRLLEHGYTVRTTIRSSPGISKDISYLTNLARAAEKLQIFNADLDDPDSFNEAIEGCMGVFHLAFPLDFADREPEEVI TKRAVDGTLGVLRACVNAKTVKRVVCASSQATVIYSGDGDEKVVDESSWTNIDYYRSLNRFGTSYLVAKNKTERAALDFAEQYGLDLVFLIPPLIVGPFI CPRIPESVRWSLSLIFGEKRLYHLLIKLNVVHTDDVARAYIFLLEFPHAKGRYICSWEEISIDEMSEFLSARYPEFQIPTKDSLKDIKGFKMRGLSPKKL LDCGFKFEHGLEDMFDGAIQSCKEKGFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147600 [exp]	0	1
					Potri.016G015300 [exp]	4.47	0.8474
AT3G22910			ATPase E1-E2 type family prote...		Potri.010G081100 [exp]	24.73	0.8389
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.002G183200 [exp]	25.45	0.8230
AT2G23970			Class I glutamine amidotransfe...		Potri.018G102000 [exp]	32.31	0.8217
					Potri.006G008900 [exp]	43.79	0.8163
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Potri.012G126100 [exp]	47.83	0.8152	Pt-ATTPPA.3
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.015G043400 [exp]	49.63	0.7796
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	54.69	0.7780	ILR1.1
AT5G41810			unknown protein		Potri.001G093500 [exp]	60.81	0.7843
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	75.71	0.7726

Compare expression of checked genes

Potri.002G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.