Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 341 / 1e-116 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 283 / 2e-93 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 227 / 2e-72 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G61720 220 / 1e-69 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G66800 197 / 4e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 197 / 9e-61 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 192 / 1e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G51410 191 / 1e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 191 / 2e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G25460 184 / 7e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G147701 [exp] 670 / 0 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 643 / 0 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 475 / 7e-170 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 472 / 8e-169 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 449 / 1e-159 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147602 [exp] 444 / 6e-158 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G148000 [exp] 439 / 1e-155 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 432 / 7e-153 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147702 [exp] 407 / 4e-143 AT2G45400 317 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004028 [exp] 340 / 2e-116 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004030 [exp] 302 / 2e-101 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 298 / 1e-99 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004029 [exp] 283 / 5e-94 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 229 / 4e-73 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 197 / 9e-61 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10008668 [exp] 193 / 3e-59 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 193 / 4e-59 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 191 / 1e-58 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030276 [exp] 186 / 4e-58 AT2G45400 158 / 5e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G147601.1 pacid=42777898 polypeptide=Potri.002G147601.1.p locus=Potri.002G147601 ID=Potri.002G147601.1.v4.1 annot-version=v4.1 ATGGAAGGAGAAAGAGGAACAGTGTGTGTTACAGGGGGCACTGGGTACTTGGCCTCGTGTTTGATCATGAAGCTCCTGGAGCAAGGCTACTCTGTTAACA CCACCGTCAGACCTCACCCTGATGGTAACAAGGACATCAGCTACCTCACAGGCCTACCGGGAGCGAAGGAGAGACTCCAGATTTTCAAAGCAGATCTCAA CGAACCAGAGAGTTTCAATGAGGCCATTGAAGGGTGCGCGGGAGTCCTTCATCTGGCTCATTCCCTCGATCTTGCTGACAGAGAACCAGAAGAAATAGCC ACCAAAAGGTCCTTGGAAGGAACCTTAGGAATTCTGAAAGCATGTCTGAATTCAAAGACAGTGAAGAGAGTTGTTTACACTTCAAGCGCAGCCGCGATTC TGTTCAGTGGCAATGGTCAAGAAGTGGTGGATGAGAGTGCATGGACAGACATGGATTACTTCAAGGATCTAAAATTGACTGCCCGTTCTTACACGGCTTC GAAGACAAAAACCGAAAGGGCTGCTCTAGAATTTGCTGAGCAGCATGGACTGGATCTAGTGACTTTGATTCCTTCTCTTGTTCTTGGTCCGTTCAATAGT CCCAGAATCCCAGCCTCGTTCTACGTGGGGCTGGCTATGATCATGGGCAACAGGAATCTATATCGACTTCTTATGGAGTCAAATATGGTACATGTGGAGG ATGTGGCCATGGCACATATCTTCCTTCTCGAGTATCCTGGTGCGAAAGGGAGGTACATCTGTTCATCAGATAGAATATCACTGAATGGGATGTCCGAATT TCTTTCTGCTAGATACCCAGATCTTCAAAGTCCAACAAAAGAGTCCTTGAAGGACATTACAGGTTACAAACAATGCGGCCTCTCGTCGAAAAAGCTCCTG GATTGTGGATTCAGATTCGAGCATGGTCTTGAGGACATGTTTGATGGAGCTATACAATCCTGCAAGGAGAGGGGGTTTATATAG
AA sequence Show only first row Show all	>Potri.002G147601.1 pacid=42777898 polypeptide=Potri.002G147601.1.p locus=Potri.002G147601 ID=Potri.002G147601.1.v4.1 annot-version=v4.1 MEGERGTVCVTGGTGYLASCLIMKLLEQGYSVNTTVRPHPDGNKDISYLTGLPGAKERLQIFKADLNEPESFNEAIEGCAGVLHLAHSLDLADREPEEIA TKRSLEGTLGILKACLNSKTVKRVVYTSSAAAILFSGNGQEVVDESAWTDMDYFKDLKLTARSYTASKTKTERAALEFAEQHGLDLVTLIPSLVLGPFNS PRIPASFYVGLAMIMGNRNLYRLLMESNMVHVEDVAMAHIFLLEYPGAKGRYICSSDRISLNGMSEFLSARYPDLQSPTKESLKDITGYKQCGLSSKKLL DCGFRFEHGLEDMFDGAIQSCKERGFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147601 [exp]	0	1
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147701 [exp]	2.00	0.9686
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147400 [exp]	3.00	0.9299	Pt-DFR1.4
AT5G52790			CBS domain-containing protein ...		Potri.017G147900 [exp]	3.31	0.7240
AT5G01830			ARM repeat superfamily protein...		Potri.016G134000 [exp]	7.48	0.7295
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019500 [exp]	8.77	0.7497
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	8.94	0.7730
AT4G05030			Copper transport protein famil...		Potri.006G001800 [exp]	9.00	0.7267
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	10.00	0.7250
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.013G102900 [exp]	12.24	0.6704
AT5G02090			unknown protein		Potri.006G090100 [exp]	14.28	0.7166

Compare expression of checked genes

Potri.002G147601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.