Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45400 317 / 4e-107 BEN1 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G42800 309 / 8e-104 M318, TT3, DFR dihydroflavonol 4-reductase (.1) AT4G35420 266 / 6e-88 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT1G61720 246 / 2e-79 BAN BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27250 203 / 8e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G02400 196 / 1e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G68540 196 / 2e-60 TKPR2, CCRL6 tetraketide alpha-pyrone reductase 2, cinnamoyl coA reductase-like 6, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G19440 195 / 5e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G33590 193 / 3e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 190 / 3e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148000 [exp] 504 / 0 AT2G45400 320 / 4e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G087200 [exp] 495 / 7e-178 AT2G45400 317 / 6e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147701 [exp] 409 / 4e-144 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147601 [exp] 407 / 4e-143 AT2G45400 341 / 1e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147600 [exp] 404 / 6e-142 AT2G45400 345 / 5e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147602 [exp] 402 / 2e-141 AT2G45400 324 / 6e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147500 [exp] 398 / 1e-139 AT2G45400 311 / 8e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147800 [exp] 398 / 2e-139 AT2G45400 313 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G147400 [exp] 395 / 1e-138 AT2G45400 344 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004028 [exp] 397 / 4e-139 AT2G45400 290 / 3e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004029 [exp] 315 / 1e-106 AT2G45400 283 / 7e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041031 [exp] 305 / 1e-102 AT5G42800 499 / 2e-178 dihydroflavonol 4-reductase (.1) Lus10004030 [exp] 283 / 6e-94 AT2G45400 267 / 2e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020072 [exp] 245 / 4e-79 AT1G61720 404 / 2e-141 BANYULS, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10030276 [exp] 228 / 2e-74 AT2G45400 158 / 5e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006141 [exp] 224 / 2e-71 AT4G35420 484 / 2e-173 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) Lus10008668 [exp] 207 / 1e-64 AT5G19440 388 / 9e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002302 [exp] 200 / 6e-62 AT5G19440 413 / 2e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026070 [exp] 199 / 2e-61 AT5G19440 419 / 4e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.002G147702.1 pacid=42777300 polypeptide=Potri.002G147702.1.p locus=Potri.002G147702 ID=Potri.002G147702.1.v4.1 annot-version=v4.1 ATGGAAGGAGATAAAGGTAAAGTGTGTGTAACTGGTGGTACTGGGTTCTTAGCATCTTGGTTGATCATGAGGCTCCTTGAACATGGCTACTCTGTTCACA CCACCATTAGACCTGACCCAGAACACAAGAGAGATGTCAGCTTCCTAACAAGTCTACCAGAAGCATCCGAGAAGCTTCAAATCTTCCAGGCAGATCTAAG TGACCCCAACAGCTTTGAGGTGGCTATTAAAGGATGCATTGGAGTCTTTCATGTAGCTACCCCTGTTGATTTTGAAAGCAAGGAACCTGAGGAAGTGGTC GTCCAAAGAGCAATTGATGGAACATTAGGCATCTTGAAGGCTTGCTTGAACTCCATGACTGTAAAGAGAGTAGTGTACACTTCCAGTGGCGCGGCAGTAG TGTTTAATGACAGTGATGTGGACACAATGGATGAGAGTTATTGGACTGATGTAGAGCATGTTAAGGCCTTAAAATCCTTCGCGGGCCCTTACTTTATTTC CAAGACATTAACGGAGAAGAGAGCTCTCGAATTTGCTGATGAACATGGATTTGATCTTGTGACAATAATCCCTTCTTTTATTAATGGACCTTTCATTTGT TCCAAGTTTCCTGGCTCGGTGCACACGTCGCTGGCTATGGTACTGGGTGAGCAGCAGAAATACGGTACTCTTTTGAATATGTCTATGGTGCATGTTGATG ATGTGGCCAGGGCACACATTTTCCTCTTCGAACATCCTGATGCGAAAGGGAGAAACATTTGTTCTTCACACACAATAACCATTGAAAAGATGTCTAAATT TCTGTCCTCCAAGTATCCTGAGTGCCCCCTACCATCATTGGAATCTTTGAAGGAAATCGAAGGCACCAGACTCGCTGGCCTCTCATCAAAGAAATTACTG GATTTGGGTTTCAAATTTAAGTGCGGGCTCGATGAAATGTTTGATGGGGCAATTCAAAGCTGCAAAGAAAAGGGTTATCTCTAG
AA sequence Show only first row Show all	>Potri.002G147702.1 pacid=42777300 polypeptide=Potri.002G147702.1.p locus=Potri.002G147702 ID=Potri.002G147702.1.v4.1 annot-version=v4.1 MEGDKGKVCVTGGTGFLASWLIMRLLEHGYSVHTTIRPDPEHKRDVSFLTSLPEASEKLQIFQADLSDPNSFEVAIKGCIGVFHVATPVDFESKEPEEVV VQRAIDGTLGILKACLNSMTVKRVVYTSSGAAVVFNDSDVDTMDESYWTDVEHVKALKSFAGPYFISKTLTEKRALEFADEHGFDLVTIIPSFINGPFIC SKFPGSVHTSLAMVLGEQQKYGTLLNMSMVHVDDVARAHIFLFEHPDAKGRNICSSHTITIEKMSKFLSSKYPECPLPSLESLKEIEGTRLAGLSSKKLL DLGFKFKCGLDEMFDGAIQSCKEKGYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147702 [exp]	0	1
AT5G28910			unknown protein		Potri.019G019800 [exp]	1.73	0.8309
AT4G23895			Pleckstrin homology (PH) domai...		Potri.001G091100 [exp]	3.74	0.7997
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156100 [exp]	6.00	0.7152
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Potri.001G246300 [exp]	9.16	0.7652
AT3G23200			Uncharacterised protein family...		Potri.010G073000 [exp]	9.94	0.7362
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.012G043900 [exp]	14.69	0.7800	NCPGS.6
AT4G32280	AUX_IAA	IAA29	indole-3-acetic acid inducible...		Potri.006G255200 [exp]	15.96	0.7708
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.010G137400 [exp]	16.94	0.7481
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	18.97	0.7272
AT2G21180			unknown protein		Potri.004G167700 [exp]	21.16	0.7189

Compare expression of checked genes

Potri.002G147702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.