Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00090 576 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 55 / 9e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 53 / 4e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G42660 52 / 9e-07 transducin family protein / WD-40 repeat family protein (.1) AT1G15440 51 / 1e-06 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT4G32990 49 / 2e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 50 / 3e-06 TAF5 TBP-associated factor 5 (.1) AT1G61210 49 / 4e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G18140 48 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G73720 49 / 6e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G069400 [exp] 731 / 0 AT4G00090 592 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G060500 [exp] 56 / 3e-08 AT1G15440 1349 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.001G173500 [exp] 56 / 5e-08 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Potri.012G065200 [exp] 54 / 2e-07 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.016G052800 [exp] 51 / 8e-07 AT3G18140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 51 / 1e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 51 / 1e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 50 / 1e-06 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G009500 [exp] 50 / 2e-06 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030275 [exp] 597 / 0 AT4G00090 608 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004027 [exp] 594 / 0 AT4G00090 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021365 [exp] 53 / 3e-07 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041007 [exp] 53 / 3e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 53 / 6e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10034114 [exp] 52 / 6e-07 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10043473 [exp] 52 / 6e-07 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10034648 [exp] 52 / 8e-07 AT3G42660 1083 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10039597 [exp] 50 / 3e-06 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10036625 [exp] 50 / 3e-06 AT4G04940 1396 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G148100.1 pacid=42778087 polypeptide=Potri.002G148100.1.p locus=Potri.002G148100 ID=Potri.002G148100.1.v4.1 annot-version=v4.1 ATGGATCAGGTCCTCCCGATTGCACTCATCTCACTCCTTCTCGGTACTGCAATCGCTCTTATTTTCTTCAAGAACTACTTCCTCAAAAGAAAATCCGAGA TTGGATCCATCTCCGAACCCGGACTTCATCCGGATCTTCATAAAAAACCTCCTAAACCTACTCACCAATCCAGAAAACCTCACTCCAAACCTCACTCGCA TGCCTCCTCCGATAAGGATCATAATAAGAAACATCATCCATTGGATTTGAACACTTTGAAAGGTCACGGTGATTCTGTTAGCGGCCTGTGTTTCTCGTAT GATGGGCGCAGTTTGGCTACCGCTTGTGCAGATGGAGTGGTGAGGGTGTTTAAATTGGATGATGCTTCGAGTAAAAGTTTCAAGTTTTTGAGAATTAATG TGCCAGCTGGAGGTCATCCGGTAGCAGTAGCGTTTTCTGATGATGCATCATCTGTGGTAGTAGCATCGCAAACACTGTCTGGTTCGTCTTTATATATGTG GGGAGAGGAAAAGGTAAAAGCTACTGATGACTCTAAGCAGCAACCAAAGCTTCCGTTGCCTGATATCAAATGGGAACATCACAAAATTCATGAGAAACGG GCTGTTTTGACCCTGGTTGGAACCGCTTCTACTTATGGAAGTGGTGATGGAAGTACAATTGTGGCCTCTTGTTCGGAAGGTACTGATATCAAAATTTGGC ATGGAAAGACAGGAAAGGTTTTGGGGAATGTCGATACAAATCAATTGAAAAACAACATGGCTACTATATCCCCAAATGGGCGTTTCATTGCTGCTGCAGC TTTTACTGCAGATGTGAAGGTATGGGAGATTGTGTATTCAAAAGATGGTTCTGTCAAGGAGGTTCCCAAAGCCATGCAACTTAAAGGGCACAAAAGTGCA GTAACATGGTTATGCTTCACTCCAGACTCAGAGCAAATCATCACAGCCTCCAAAGATGGTTCGATAAGAATTTGGAACATCAATGTTCGTTATCATCTTG ATGAGGATCCAAAGACTTTAAAGGTGTTTCCGATTCCACTTCATGATTCAAATGGTGCAACTTTGCATTATGATCGTCTCAGTTTATCCCCTGATGGAAG GATATTGGCTGCAACACATGGTTCGATGTTGCAGTGGTTATGTGTTGAAACTGGAAAGGTTTTGGACACGGCTGACAATGCCCATAATGGTGACATCACA TGGATTGCATGGGCGCCTAAACCTATGCCAGCAGGTGATGGACGGACCTTCGTTTTGGCCACGGCCAGCGTGGACAAGAAAGTGAAGTTATGGGCAGCTC CACCGCTTAAGATATGA
AA sequence Show only first row Show all	>Potri.002G148100.1 pacid=42778087 polypeptide=Potri.002G148100.1.p locus=Potri.002G148100 ID=Potri.002G148100.1.v4.1 annot-version=v4.1 MDQVLPIALISLLLGTAIALIFFKNYFLKRKSEIGSISEPGLHPDLHKKPPKPTHQSRKPHSKPHSHASSDKDHNKKHHPLDLNTLKGHGDSVSGLCFSY DGRSLATACADGVVRVFKLDDASSKSFKFLRINVPAGGHPVAVAFSDDASSVVVASQTLSGSSLYMWGEEKVKATDDSKQQPKLPLPDIKWEHHKIHEKR AVLTLVGTASTYGSGDGSTIVASCSEGTDIKIWHGKTGKVLGNVDTNQLKNNMATISPNGRFIAAAAFTADVKVWEIVYSKDGSVKEVPKAMQLKGHKSA VTWLCFTPDSEQIITASKDGSIRIWNINVRYHLDEDPKTLKVFPIPLHDSNGATLHYDRLSLSPDGRILAATHGSMLQWLCVETGKVLDTADNAHNGDIT WIAWAPKPMPAGDGRTFVLATASVDKKVKLWAAPPLKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00090			Transducin/WD40 repeat-like su...		Potri.002G148100 [exp]	0	1
AT5G43960			Nuclear transport factor 2 (NT...		Potri.002G257000 [exp]	14.56	0.6631
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156500 [exp]	31.41	0.6083
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.019G047200 [exp]	34.64	0.5866
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052100 [exp]	41.42	0.5462
AT1G17410			Nucleoside diphosphate kinase ...		Potri.003G068100 [exp]	46.76	0.6021
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.004G161200 [exp]	51.16	0.5456
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.002G070200 [exp]	67.15	0.5579	RBP1.2
AT4G32560			paramyosin-related (.1.2.3)		Potri.006G247900 [exp]	82.81	0.5521
AT3G10360		APUM4	pumilio 4 (.1)		Potri.010G225600 [exp]	88.73	0.5224
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052232 [exp]	91.84	0.5120

Compare expression of checked genes

Potri.002G148100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.