Plant FIBer expression Database

Potri.002G148200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48050 631 / 0 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G069700
[exp]
854 / 0 AT1G48050 828 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009294
[exp]
736 / 0 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
Lus10015868
[exp]
719 / 0 AT1G48050 826 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0616 SPOC PF02735 Ku Ku70/Ku80 beta-barrel domain
CL0616 PF03730 Ku_C Ku70/Ku80 C-terminal arm
Representative CDS sequence
>Potri.002G148200.2 pacid=42779759 polypeptide=Potri.002G148200.2.p locus=Potri.002G148200 ID=Potri.002G148200.2.v4.1 annot-version=v4.1
ATGGATATGCTGATAAAAAAGTATCAAGCAACAAACAAAGGAAAGAAGCGTCTCTGTCTTATTACAAATGCACTGTGTCCTGTTAAATATCCATATGAGG
GGACCAGGGAAGATCAAGTGAACACTATCGCAGCTCAAATGAGTGCACGTGGAGTGAAAATGGAAAGTATTATTGCGAGGGGAAGATTAAACGGGGGTGG
AAACCAAAGAATAATGGAGGAAAATGACCAACTGCTGAATCTTTTCTCAGAGAAAACATCTGCTAAGGCAGTGTATGTTGAGACTCCTACTGCATTGTTA
GGTGCACTTAGAACTCGAAATATATCTCCAGTTACAATATTCAGAGGTGACCTTGAACTCAGCTCCAAGATGAAGATCAAGGTGTGGGTCTACAAAAAGA
CCATAGAGGAGAGGTTTCCCACTCTGAAGAAATACTCTGACAAAGCACCTCCAACAAACAGATTTGCTACACATGAAGTCAAGTTAGATTATGAGTACAA
AAGTGTGGAAGATCCTAGTAAGGTCGTTCCTCCAGAACAAAGAATTAAGGGTTATAGATATGGACCACAAGTTGTTCCAATATCATCTGCTGAGTGGGAT
GTTGTGAAATTCAAACCAGAAAAGAGTGCGAAGCTTCTAGGATTTGCTGATGCTTCAAACATAATGCGACACTACTACATGAAAGATGTCAACATCTTTA
TTCCTGAACCAGGCAATACATGTGCTGCTTTTGCAGTTTCTGCTTTAGCCAGAGCAATGAAGGAAATGAACAATGTTGCAATTTTGCGATTTGTGTGGAG
ACAACACCAAAGGAATGCTGTTGTTGGGGTTTTGACACCCAACATATCTGAGAAAGACGGCACTCCTGATTCATTTTACTTTAATGTACTTCCTTTCGCT
GAGGATGTCCGAGAATTTCAGTTTCCATCTTTTAGCAATTTTCCAGCTTCTTGGCTGCCGAATGAACAGCAGCAAGAGGCTGCAGATAACCTTGTAAAGA
TGCTTGACCTTGCACCATCTGGCAAACAGGAAGCTCTGCTACCTGATTTCACACCAAATCCCATTCTGGAGCGATTTTATCATCATCTCGAGTTGAAGTC
AAAGCATTCAGATGCAGCTGTGCCTCCACTTGATGAAACTCTCAAAACAATAACTGAACCTGATCCAGATCTTCTTTCTGCAAACAAAAATGTAGTTGAT
GCATTTTGTAAGAGCTTTGAACTCAAGGAACATCCAAGGCAGAAGAAATCAAGCAAGCAATTGTTGCGAGAAAAACCCCCTGGCCTGGATGAGGAAGAGG
GTTACGAAGGTGCAACTAATGCTCTATCTCCCAAGCCTGTTAAGATCAAGAAAATTGGGGATTCTAGTCCAGTTCAAGATTTTGAAGTCATGATGTCAGG
CAGAGATAGTCCAGATTGGGTTGGTAAAGTAATCAAGGATATGAAAAACAAAATATAG
AA sequence
>Potri.002G148200.2 pacid=42779759 polypeptide=Potri.002G148200.2.p locus=Potri.002G148200 ID=Potri.002G148200.2.v4.1 annot-version=v4.1
MDMLIKKYQATNKGKKRLCLITNALCPVKYPYEGTREDQVNTIAAQMSARGVKMESIIARGRLNGGGNQRIMEENDQLLNLFSEKTSAKAVYVETPTALL
GALRTRNISPVTIFRGDLELSSKMKIKVWVYKKTIEERFPTLKKYSDKAPPTNRFATHEVKLDYEYKSVEDPSKVVPPEQRIKGYRYGPQVVPISSAEWD
VVKFKPEKSAKLLGFADASNIMRHYYMKDVNIFIPEPGNTCAAFAVSALARAMKEMNNVAILRFVWRQHQRNAVVGVLTPNISEKDGTPDSFYFNVLPFA
EDVREFQFPSFSNFPASWLPNEQQQEAADNLVKMLDLAPSGKQEALLPDFTPNPILERFYHHLELKSKHSDAAVPPLDETLKTITEPDPDLLSANKNVVD
AFCKSFELKEHPRQKKSSKQLLREKPPGLDEEEGYEGATNALSPKPVKIKKIGDSSPVQDFEVMMSGRDSPDWVGKVIKDMKNKI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G48050 KU80, ATKU80 ARABIDOPSIS THALIANA KU80 HOMO... Potri.002G148200
[exp]
0 1
Potri.008G105401
[exp]
2.82 0.8595
AT5G13960 SDG33, KYP, SUV... SET DOMAIN PROTEIN 33, KRYPTON... Potri.003G162801
[exp]
3.87 0.8367
AT2G17450 RHA3A RING-H2 finger A3A (.1) Potri.007G057300
[exp]
4.24 0.8062
AT3G14470 NB-ARC domain-containing disea... Potri.018G003502
[exp]
5.47 0.8198
AT1G64320 myosin heavy chain-related (.1... Potri.001G094266
[exp]
5.91 0.8166
AT1G76510 ARID ARID/BRIGHT DNA-binding domain... Potri.005G257300
[exp]
8.36 0.7938
AT3G62900 CW-type Zinc Finger (.1) Potri.013G020200
[exp]
8.48 0.7856
AT2G33240 ATXID, XID myosin XI D (.1) Potri.010G062480
[exp]
12.24 0.8029
AT4G21520 Transducin/WD40 repeat-like su... Potri.004G034600
[exp]
14.42 0.7949
AT3G15160 unknown protein Potri.011G135800
[exp]
15.00 0.7916

Potri.002G148200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.