Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45420 234 / 1e-77 AS2 LBD18, ASL20 LOB domain-containing protein 18 (.1) AT4G00220 231 / 2e-76 AS2 JLO, LBD30, ASL19 LOB DOMAIN-CONTAINING PROTEIN 30, JAGGED LATERAL ORGANS, Lateral organ boundaries (LOB) domain family protein (.1) AT4G00210 174 / 3e-54 AS2 LBD31 LOB domain-containing protein 31 (.1) AT3G03760 173 / 3e-53 AS2 LBD20 LOB domain-containing protein 20 (.1) AT2G45410 167 / 8e-52 AS2 LBD19 LOB domain-containing protein 19 (.1) AT2G42430 167 / 3e-51 AS2 ASL18, LBD16 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) AT3G58190 166 / 3e-51 AS2 LBD29, ASL16 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) AT2G42440 160 / 8e-49 AS2 Lateral organ boundaries (LOB) domain family protein (.1) AT5G06080 155 / 2e-47 AS2 LBD33 LOB domain-containing protein 33 (.1) AT2G31310 150 / 2e-45 AS2 LBD14 LOB domain-containing protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070400 [exp] 320 / 3e-111 AT2G45420 237 / 2e-78 LOB domain-containing protein 18 (.1) Potri.014G070300 [exp] 189 / 1e-60 AT4G00210 181 / 5e-58 LOB domain-containing protein 31 (.1) Potri.002G148900 [exp] 184 / 2e-58 AT4G00210 186 / 2e-59 LOB domain-containing protein 31 (.1) Potri.013G064501 [exp] 171 / 6e-53 AT3G03760 209 / 1e-67 LOB domain-containing protein 20 (.1) Potri.002G041100 [exp] 169 / 2e-52 AT2G42440 186 / 6e-59 Lateral organ boundaries (LOB) domain family protein (.1) Potri.002G041200 [exp] 167 / 9e-52 AT2G42430 191 / 6e-61 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.005G221900 [exp] 166 / 2e-51 AT2G42430 209 / 3e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Potri.010G200400 [exp] 165 / 1e-50 AT5G06080 152 / 8e-47 LOB domain-containing protein 33 (.1) Potri.001G345700 [exp] 130 / 5e-38 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009298 [exp] 174 / 2e-54 AT2G45410 193 / 2e-62 LOB domain-containing protein 19 (.1) Lus10000613 [exp] 169 / 4e-52 AT3G58190 215 / 1e-70 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10033873 [exp] 169 / 4e-52 AT3G58190 220 / 1e-72 ASYMMETRIC LEAVES 2-LIKE 16, lateral organ boundaries-domain 29 (.1) Lus10024877 [exp] 166 / 1e-50 AT2G42430 211 / 6e-68 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10000707 [exp] 164 / 5e-50 AT2G42430 222 / 2e-72 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10033872 [exp] 160 / 1e-48 AT2G42430 212 / 6e-69 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10014757 [exp] 160 / 2e-48 AT2G42430 208 / 2e-67 ASYMMETRIC LEAVES2-LIKE 18, lateral organ boundaries-domain 16 (.1) Lus10004707 [exp] 141 / 8e-42 AT5G06080 154 / 1e-47 LOB domain-containing protein 33 (.1) Lus10022264 [exp] 129 / 6e-37 AT5G63090 223 / 9e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10039940 [exp] 128 / 8e-37 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.002G149000.1 pacid=42778528 polypeptide=Potri.002G149000.1.p locus=Potri.002G149000 ID=Potri.002G149000.1.v4.1 annot-version=v4.1 ATGAGTACTACAACAACAAACCCTATAAATAGCGGTGTTGGTGGTGGGAGCAGTGGTGGTGGAGGTGCAGGTGGAAGTAGTGGTGGTGGAGGTGGGCCAT GTGGTGCTTGTAAATTCTTGAGGAGGAAGTGTGTGCCAGGCTGTATATTTGCACCTTATTTTGACTCGGAGCAAGGTGCGGCACATTTTGCAGCGGTGCA TAAGGTTTTTGGTGCGAGTAATGTGTCAAAGCTTTTATTACACATACCTGCCCACAAAAGACCTGATGCTGTGGTCACAATTTGCTATGAGGCTCAAGCT CGTTTAAGAGATCCAGTTTATGGATGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTGGTAAATTTACAAGCAGAACTCTCATACTTACAAGCCCATC TAGCAGCAATGGAAGTTCCATCGCCACCTCCTCCACCACCGCCAGCACTAGTGACGTCGCCTCCATTCTCAATAGCTGACCTCCCATCAGCCTCTTCTAT CCCCGGCGCCGCGTATGATTTATCATCTCTTTTTGATCCAATGGTGCAACCATCATGGTCCATGCAGCCAAGACAGCTGGACCCCCATCAGTTTGGAGGC AGCAGTGGCACGTCAGAAACTAGTGGTGGTGATCTACAAGCATTGGCTCGTGAGCTCCTCCATAGACGAGGATCTCTACCGCCAGGGTCCGTGCCCTGTA GTGACGCATTAGCATCATCATCTATCTCTAAATGA
AA sequence Show only first row Show all	>Potri.002G149000.1 pacid=42778528 polypeptide=Potri.002G149000.1.p locus=Potri.002G149000 ID=Potri.002G149000.1.v4.1 annot-version=v4.1 MSTTTTNPINSGVGGGSSGGGGAGGSSGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPAHKRPDAVVTICYEAQA RLRDPVYGCVAHIFALQQQVVNLQAELSYLQAHLAAMEVPSPPPPPPPALVTSPPFSIADLPSASSIPGAAYDLSSLFDPMVQPSWSMQPRQLDPHQFGG SSGTSETSGGDLQALARELLHRRGSLPPGSVPCSDALASSSISK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45420	AS2	LBD18, ASL20	LOB domain-containing protein ...		Potri.002G149000 [exp]	0	1
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	1.41	0.9156
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.014G074500 [exp]	1.73	0.8548
AT3G61490			Pectin lyase-like superfamily ...		Potri.003G131700 [exp]	5.47	0.8549
AT3G57200			unknown protein		Potri.006G045500 [exp]	5.65	0.8510
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Potri.017G088700 [exp]	5.83	0.8042
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050700 [exp]	6.48	0.8367
AT1G56130			Leucine-rich repeat transmembr...		Potri.006G255100 [exp]	6.70	0.8232
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	7.07	0.8438
AT3G21550		AtDMP2	Arabidopsis thaliana DUF679 do...		Potri.010G027600 [exp]	7.48	0.8327
					Potri.002G049650 [exp]	8.30	0.7914

Compare expression of checked genes

Potri.002G149000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.