Potri.002G149200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G60860 2689 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT1G01960 2564 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1)
AT4G38200 1596 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT4G35380 1553 / 0 SEC7-like guanine nucleotide exchange family protein (.1)
AT3G43300 888 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
AT5G39500 309 / 2e-85 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1)
AT1G13980 303 / 1e-83 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
AT5G19610 237 / 6e-63 GNL2 GNOM-like 2 (.1)
AT5G27970 79 / 3e-14 ARM repeat superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G070600 3263 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.004G208400 1722 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.009G169800 1707 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Potri.006G216900 575 / 3e-174 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Potri.017G078900 297 / 1e-81 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.017G078800 276 / 6e-75 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Potri.018G075300 230 / 1e-60 AT5G19610 1796 / 0.0 GNOM-like 2 (.1)
Potri.013G035100 94 / 1e-18 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009300 3030 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10015863 2061 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009244 1758 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10022983 1672 / 0 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10001620 1607 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
Lus10009803 867 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Lus10038084 791 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Lus10036789 334 / 3e-93 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10026627 315 / 5e-87 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Lus10030432 312 / 3e-86 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01369 Sec7 Sec7 domain
PF12783 Sec7_N Guanine nucleotide exchange factor in Golgi transport N-terminal
PF16213 DCB Dimerisation and cyclophilin-binding domain of Mon2
Representative CDS sequence
>Potri.002G149200.1 pacid=42778147 polypeptide=Potri.002G149200.1.p locus=Potri.002G149200 ID=Potri.002G149200.1.v4.1 annot-version=v4.1
ATGGCTTCCTCGGAAGCCGATTCCCGGTTAAGCCAAGTGGTATCCCCTGCTTTAGAAAAAATCGTCAAAAACGCATCGTGGCGTAAACACTCGAAATTAG
CACACGAATGCAAATCCGTCCTCGAGATTCTCACTTCTCGAAAACCCCAACAACAACATCCTCCGACTTCCCCGTCGGACGACTCCTCATCCGAATCCTC
TCTCCCTGGCCCACTCCACGACGGCGGGTCCATCGAGTACTCCCTCGCCGAATCTGAATCTATCCTCAGCCCTCTGATCAACGCGTGCAACACTCAATTC
CTCAAGATCGTCGATCCAGCCGTTGATTGCATCCAGAAATTGATCGCGCATGGGTACCTACGTGGCGAGGCGGACTCCACCGGAGGTACTGAAGCGAAAT
TGCTAGCTAAGTTGATTGAATCTGTGTGTAAATGTTATGATTTAGGGGATGATGGTGCTGAATTGCTGGTTTTGAAAACCCTATTATCAGCCGTTACGTC
GATTTCGTTGAGAATTCATGGAGATTGTTTGTTACAAATAGTGAGAACTTGTTATGACATTTATTTAGGGAGTAAAAATGTAATTAATCAAACGACGGCG
AAAGCGTCTTTGATTCAAATGTTAGTTATTGTGTTTAGGAGAATGGAGGCTGATTCTTCAACGGTTCCGGTTCAGCCGATTGTTGTGGCTGAATTAATGG
AACCAGTGGAGAAAACGGATGTCGATGGATCAATGGCGGTGTTTGTTCAAGGTTTTATAACGAAAATTATGCAGGATATAGATGGGGTTTTTAATCCGGG
GACACCCAGTAAGTCTTCGATGACAGTGGCACATGATGGGGCTTTCGAGACCACTACTGGTACGGTGGAGAGTACAAATCCGGCAGATTTGCTTGATTCG
ACGGATAAGGATATGTTAGATGCCAAATATTGGGAAATTAGTATGTATAAGACGGCTTTGGAAGGCAGGAAAGGGGAGTTGGCTGATGGGGAAGGGGAGA
GGGAGGATGATTTGGAAGTGCAGATTGGGAATAAGTTGAGGAGAGATGCATTTTTGGTGTTTCGAGCACTTTGTAAGTTATCTATGAAAACTCCGCCCAA
AGAAGCATTGGCGGATCCACAGTTGATGAGAGGGAAGATTGTTGCATTGGAGTTATTGAAGATTTTGTTGGAGAATGCTGGTGCTGTGTTTAGGACTAGT
GACAGGTTCTTAGGTGCCATCAAGCAATATCTATGTCTTTCACTGTTGAAGAACAGCTCGTCAAGTCTTATGATCATTTTCCAGCTTTCTTGCTCCATTT
TCATTAGTTTGGTTTCAAGGTTCAGAGCTGGACTGAAAGCAGAAATTGGAGTATTTTTTCCTATGATTGTTCTCAGGATTCTTGAAAATATTGTTCAACC
TAATTTTCAGCAGAAGATTATAGTACTTCGGTTTCTAGATAAGCTCTGTGTTGATTCCCAGATCTTGGTAGACATTTTTATTAATTATGACTGTGATATC
AACTCATCAAACATATTTGAGAGAATGGTCAATGGACTTCTTAAAACTGCTCAAGGTGCCCTGCCTGGTACTGCCACTACACTGGTGCCACCTCAGGAGG
TGACCATGAAACTTGAAGCTATGAAGTCCTTAGTGGCTATTCTGAAATCAATGGGAGACTGGATGAATAAACAATTGCGCATTCCCGATCCTCATTCTGC
CAAGAAATCTGATGCAGCCGAAAACAGTCCTGGACCTGGAAGTCTTCCCATGACAAATGGTAATGGGGATGAGCCTGTTGAAGGATCAGATTCTCATTCT
GAAACCTCAACTGAAGCATCGGATGTTTCAGCTATTGAGCAACGACGGGCTTACAAGCTGGAATTTCAGGAAGGTATATCTCTTTTCAATCGGAAGCCTA
AGAAAGGAATTGAATTTCTAATCAATGCAAATAAAGTGGGGAATTCAGCAGAAGAGATAGCAGCCTTTCTTAAAAACGCATCTGGCTTGAACAAGACTCT
GATTGGCGATTACCTTGGGGAAAGAGAAGATTTTTCACTGAAAGTAATGCATGCTTATGTAGATTCTTTTGACTTTCGCGGCCTGGAGTTCGATGAGGCT
ATCAGAGTCTTTCTACAGGGCTTTAGGTTACCAGGTGAGGCACAAAAGATTGATCGAATTATGGAGAAGTTTGCTGAACGTTACTGCAAATGTAACCCAA
AGGTTTTTAGCAGTGCTGACACAGCCTATGTCCTTGCTTACTCCGTGATACTGCTCAACACTGATGCTCATAATCCCATGGTGAAGAATAAGATGTCAGC
TGATGACTTCATAAGAAACAACCGTGGCATTGATGATGGGAAAGATCTACCTGAGGAGTACTTGAGATCTTTGTTTGAAAGAATATCAAAAAATGAGATC
AAAATGAAAGAATATGATTTAGCTCTCCAACAAAAGCAGTCTTTGAATTCAAACAGAGTTTTAGGCTTGGATAGTATCCTGAACATTGTGATCCGCAAGC
GGGGTGAAGAAAAGAATATGGAAACAAGTGATGATCTTATCAGGCACATGCAGGAACAATTTAAAGAAAAAGCTCGAAAATCTGAGTCAGTTTATTATGC
TGCAACAGATGTGGTGATTCTTAGATTCATGATTGAGGTATGCTGGGCTCCTATGCTGGCAGCCTTCAGTGTGCCTCTTGACCAAAGTGATGATGAAGTG
GTGATAGCTTTGTGTCTTGAAGGTATCCGCTATGCAATCCATGTTACTGCTGTGATGTCCATGAAGACTCATAGAGATGCTTTTGTGACTTCATTAGCAA
AGTTTACATCGCTCCACTCCCCTGCTGATATAAAGCAGAAAAATATTGATGCTATCAAGGCAATAGTTACAATTGCAGATGAAGATGGGAATTATTTGCA
AGAAGCTTGGGAACATATTTTGACATGTGTCTCACGCTTTGAACATTTGCATCTCCTGGGAGAGGGTGCTCCTCCAGATGCCACTTTTTTTGCTTTTCCC
CAAAATAACTCTGAAAAGTCAAAACAAAGCAAGTCAACCATCCTCCCTGTTCTGAAAAAGAAGGGACCCGGGAGGATGCAGCATGCAGCTGCTAGTGTGC
TGAGAGGTTCATATGATAGTGCTGGTATTGGTGGAAACGCTGCTGGGGCTGTCACAAGTGAGCAGATGAACAATTTAGTTTCCAACTTAAACAAGTTAGA
GCAAGTTGGCAGCTCTGAGATGAACCGCATCTTCACACGGAGCCAAAAGTTAAACAGTGAGGCAATAATTGACTTTGTGAAGGCTCTTTGCAAGGTTTCT
GTGGAGGAATTGAGATCAGCTTCTGATCCACGGGTCTTTAGCCTTACAAAGATTGTTGAGATTGCGCACTTTAACATGAATCGCATCAGGCTTGTATGGT
CAAGCATCTGGCATGTGCTTTCTGATTTCTTTGTAACCATTGGCTGTTCTGAAAACCTTTCCATTGCAATTTTTGCAATGGACTCTTTACGCCAATTATC
AATGAAATTCTTAGACCGAGAAGAGTTGGCAAACTATAATTTTCAGAATGAGTTTATGAAGCCGTTTGTTATTGTTATGCGGAAGAGTAATGCTGTTGAA
ATCAGAGAATTGATTATCAGATGTGTCTCGCAAATGGTCCTGTCTCGTGTCAATAATGTTAAATCTGGATGGAAGAGCATGTTCATGGTTTTCACAGCAG
CAGCTTATGATGACCACAAAAACATTGTACTCTTGGCCTTTGAAATAATTGAAAAGATTATTAGAGATTACTTCCCATACATTACGGAGACTGAAACAAC
CACCTTTACTGATTGTGTGAATTGCCTGATAGCATTCACCAATAGTAGATTCAACAAAGACATTAGCCTTAATGCAATTGCTTTTCTTCAATTCTGTGCC
ACAAAACTTGCTGAAGGAGATCTTGGATCTTCATCAAGGAACAAAGACAAGGAAGTCTCTGTAAAAATTTCATCCCCTTCACCTCGGACTGGAAAAGATG
GAAAACAAGAGAATGGAGAAATCAAAGACAAGGAAGATCATCTTTATTTCTGGTTCCCTCTGTTGGCTGGTTTATCAGAACTTAGCTTTGACCCTAGGCC
TGAAGTCAGGAAGAGTGCCTTGCAAGTTCTGTTTGAAACTTTACGCAATCATGGTCATCTTTTTTCTCTACCTTTATGGGAAAGAGTCTTTGAGTCGGTC
TTATTTCCTATATTTGACTATGTGCGGCATGCTATTGATCCTCCTGGAGGCAACTCCCCTGAGCAGGGGATTGATGGTGATATGGGTGAACTTGATCAAG
ATGCATGGCTCTATGGGACATGTACCTTGGCTCTCCAACTGGTTGTAGATCTTTTTGTGAAATTCTACAATACTGTCAATCCGCTTTTAAGAAAGGTGCT
ATCGCTTCTGGTTAGCTTCATTAGGCGTCCTCACCAAAGTCTTGCTGGTATTGGTATTGCGGCATTTGTGCGTTTGATGAGCAATGCTGGAGATATGTTT
TCAGAGGAGAAGTGGCTGGAAGTGGTTTTGTCATTGAAAGATGCTGCCAATGCAACACTCCCTGATTTCTCTTACATTGTAAGTGGAGAATCATCGGTAA
TAGCCGATGAACAAAATAATGGAGAGACTGCTGGATCTGACATGCCCGAAGATGAATCAGAGGGACTGGTGACACACCATCTTTATGCTTCTATATCTGA
TGCAAAGTGTCGAGCTGCTGTTCAACTTCTGTTGATTCAGGCGGTGATGGAGATCTATAGCATGTACCGGTCTCAACTTTCAGCAAAATGTGCCTTGGTG
CTCTTTGATGCTTTGCATGAGGTGGCATCCCATGCTCACAGTATCAACACAAATACAACATTACGTTCAAAACTACAAGAGTTTGGCTCTATGACCCAAA
TGCAAGACCCTCCACTATTACGCCTGGAGAATGAGTCCTATCAAATTTGCCTCACATTCTTACAAAATCTTATGATGGACAGACCTCCACCTTTTGATGA
AGCTGAAGTGGAATCCTGCCTTGTCAACCTCTGTGAAGAGGTTTTACAGTTTTACGTTGTAACTGCCTGTTCTGGACAGGCATCAGAAACTTCTACCAGT
GGACAATGCCTGTGGCTGATTCCTTTAGGTTCTGGAAAACGAAGGGAATTGGCTGCACGTGCACCTCTTATTGTTGCAACTCTCCAGGCCATCTGTAGTT
TGGGAGACTCTTCGTTTGAGAAGAAATTGCCTCATTTCTTCCCTCTTCTTTCGAGTTTGATAAGTTGTGAGCATGGGTCAAATGAGGTCCAGGTAGCTCT
CAGTGACATGCTCAGCTCATCAGTGGGTCCTGTTTTGCTTCGGTCTTGTTGA
AA sequence
>Potri.002G149200.1 pacid=42778147 polypeptide=Potri.002G149200.1.p locus=Potri.002G149200 ID=Potri.002G149200.1.v4.1 annot-version=v4.1
MASSEADSRLSQVVSPALEKIVKNASWRKHSKLAHECKSVLEILTSRKPQQQHPPTSPSDDSSSESSLPGPLHDGGSIEYSLAESESILSPLINACNTQF
LKIVDPAVDCIQKLIAHGYLRGEADSTGGTEAKLLAKLIESVCKCYDLGDDGAELLVLKTLLSAVTSISLRIHGDCLLQIVRTCYDIYLGSKNVINQTTA
KASLIQMLVIVFRRMEADSSTVPVQPIVVAELMEPVEKTDVDGSMAVFVQGFITKIMQDIDGVFNPGTPSKSSMTVAHDGAFETTTGTVESTNPADLLDS
TDKDMLDAKYWEISMYKTALEGRKGELADGEGEREDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKIVALELLKILLENAGAVFRTS
DRFLGAIKQYLCLSLLKNSSSSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRILENIVQPNFQQKIIVLRFLDKLCVDSQILVDIFINYDCDI
NSSNIFERMVNGLLKTAQGALPGTATTLVPPQEVTMKLEAMKSLVAILKSMGDWMNKQLRIPDPHSAKKSDAAENSPGPGSLPMTNGNGDEPVEGSDSHS
ETSTEASDVSAIEQRRAYKLEFQEGISLFNRKPKKGIEFLINANKVGNSAEEIAAFLKNASGLNKTLIGDYLGEREDFSLKVMHAYVDSFDFRGLEFDEA
IRVFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKVFSSADTAYVLAYSVILLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEYLRSLFERISKNEI
KMKEYDLALQQKQSLNSNRVLGLDSILNIVIRKRGEEKNMETSDDLIRHMQEQFKEKARKSESVYYAATDVVILRFMIEVCWAPMLAAFSVPLDQSDDEV
VIALCLEGIRYAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVTIADEDGNYLQEAWEHILTCVSRFEHLHLLGEGAPPDATFFAFP
QNNSEKSKQSKSTILPVLKKKGPGRMQHAAASVLRGSYDSAGIGGNAAGAVTSEQMNNLVSNLNKLEQVGSSEMNRIFTRSQKLNSEAIIDFVKALCKVS
VEELRSASDPRVFSLTKIVEIAHFNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLDREELANYNFQNEFMKPFVIVMRKSNAVE
IRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTAAAYDDHKNIVLLAFEIIEKIIRDYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLQFCA
TKLAEGDLGSSSRNKDKEVSVKISSPSPRTGKDGKQENGEIKDKEDHLYFWFPLLAGLSELSFDPRPEVRKSALQVLFETLRNHGHLFSLPLWERVFESV
LFPIFDYVRHAIDPPGGNSPEQGIDGDMGELDQDAWLYGTCTLALQLVVDLFVKFYNTVNPLLRKVLSLLVSFIRRPHQSLAGIGIAAFVRLMSNAGDMF
SEEKWLEVVLSLKDAANATLPDFSYIVSGESSVIADEQNNGETAGSDMPEDESEGLVTHHLYASISDAKCRAAVQLLLIQAVMEIYSMYRSQLSAKCALV
LFDALHEVASHAHSINTNTTLRSKLQEFGSMTQMQDPPLLRLENESYQICLTFLQNLMMDRPPPFDEAEVESCLVNLCEEVLQFYVVTACSGQASETSTS
GQCLWLIPLGSGKRRELAARAPLIVATLQAICSLGDSSFEKKLPHFFPLLSSLISCEHGSNEVQVALSDMLSSSVGPVLLRSC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G60860 SEC7-like guanine nucleotide e... Potri.002G149200 0 1
AT1G58250 SAB SABRE, Golgi-body localisation... Potri.002G110700 3.60 0.7782 SAB.2
AT5G22770 ALPHA-ADR alpha-adaptin (.1.2.3) Potri.004G189700 4.89 0.7145
AT1G03060 SPI SPIRRIG, Beige/BEACH domain ;W... Potri.002G047700 9.48 0.6854
AT1G20760 Calcium-binding EF hand family... Potri.005G253000 11.31 0.6817
AT4G00450 CCT, CRP CRYPTIC PRECOCIOUS, CENTER CIT... Potri.014G084500 15.68 0.7037
AT3G59770 AtSAC9, SAC9 ARABIDOPSIS THALIANA SUPPRESSO... Potri.013G128500 26.55 0.6030
AT5G24350 unknown protein Potri.012G020000 28.28 0.6936
AT5G18525 protein serine/threonine kinas... Potri.010G153300 35.55 0.6552
AT3G07160 CALS9, ATGSL10 glucan synthase-like 10 (.1) Potri.001G011900 39.57 0.6767
AT1G58230 binding (.1) Potri.002G111000 40.64 0.6840

Potri.002G149200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.