Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45430 227 / 7e-73 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G22810 220 / 3e-70 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G12050 214 / 9e-68 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G42940 180 / 1e-55 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G60870 178 / 1e-54 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT2G35270 171 / 1e-51 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT4G14465 161 / 6e-48 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT4G35390 160 / 2e-47 AT-hook AGF1 AT-hook protein of GA feedback 1 (.1) AT1G76500 159 / 9e-47 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT4G17800 155 / 3e-45 AT-hook Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070800 [exp] 382 / 5e-134 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.003G116900 [exp] 312 / 1e-106 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 295 / 5e-100 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 188 / 3e-58 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.001G142800 [exp] 186 / 4e-57 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 181 / 1e-55 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.002G059400 [exp] 180 / 3e-55 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.005G257200 [exp] 181 / 5e-55 AT1G76500 192 / 2e-59 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) Potri.013G044500 [exp] 177 / 7e-54 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015862 [exp] 191 / 3e-59 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10020763 [exp] 187 / 5e-58 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 183 / 5e-56 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10006577 [exp] 167 / 9e-50 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10000519 [exp] 164 / 8e-49 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 162 / 2e-47 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10031460 [exp] 156 / 6e-47 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 149 / 3e-44 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10006664 [exp] 142 / 2e-41 AT2G45430 178 / 2e-55 AT-hook motif nuclear-localized protein 22 (.1) Lus10042551 [exp] 131 / 3e-36 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.002G149300.1 pacid=42778108 polypeptide=Potri.002G149300.1.p locus=Potri.002G149300 ID=Potri.002G149300.1.v4.1 annot-version=v4.1 ATGGATCCAGTTGCGGCTCATGGGCGTCCTCTTCCTCCACCTTTCCACACAAGAGATTTTCATCTACATCAATTTCAACACCAGCAACAACAGAATTCTG AAGATGAACAAAGCGGTAACGGTAACTTAAACCGTGGTCAAAAGCGAGAGCACGCTGAAATCGCCACTAATAACAACAACACAGCAGAAGGCAAAGAATT AGTTCCTTCAAGTGCTGGTGGAGAAGGAGAAATTACAAGAAGACCAAGAGGTAGGCCTGCTGGGTCTAAAAACAAGCCTAAACCACCAATCATAATCACA AGAGATAGCCCAAATGCCCTTCGATCCCATGTCATGGAAATCGCTACCGGATGCGATATCATGGAGAGTGTATCAACTTTTGCAAGGAGGAGGCAAAGAG GAGTTTGCATTTTGAGTGCAACCGGAACAGTAACAAATGTAACTCTTAAGCAACCAGCTTCGCCCGGTGCGGTGGTTACTTTACATGGAAGATTCGAGAT TTTATCGCTTTCAGGTTCGTTCTTGCCACCTCCAGCTCCACCAGCTGCTTCAGGATTGACGATTTATTTAGCTGGTGGCCAAGGCCAAGTTGTTGGGGGG AGTGTGGTTGGCCCACTTCTAGCATCTGGACCGGTGGTGATCATGGCTGCTTCTTTTGGTAATGCAGCTTATGAGAGGCTGCCTTTGGAAGAGGATGAGT CGCAAACACCGGTGCCTGGAACTGGACCTTTAGGGTCACCAGGAGTTAGTAGCATTGGGCAACAGAATCAGCAACAACACCAACTAATGCAAGATCCAAA CACATCTCTCTTTCAAGGGTTGCCTCAGAATCTACTAAATTCAGTGCAACTCCCATCTGAGGCCTACTGGGGCACAGGCGGCCGCCCTCCTTATTAG
AA sequence Show only first row Show all	>Potri.002G149300.1 pacid=42778108 polypeptide=Potri.002G149300.1.p locus=Potri.002G149300 ID=Potri.002G149300.1.v4.1 annot-version=v4.1 MDPVAAHGRPLPPPFHTRDFHLHQFQHQQQQNSEDEQSGNGNLNRGQKREHAEIATNNNNTAEGKELVPSSAGGEGEITRRPRGRPAGSKNKPKPPIIIT RDSPNALRSHVMEIATGCDIMESVSTFARRRQRGVCILSATGTVTNVTLKQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGG SVVGPLLASGPVVIMAASFGNAAYERLPLEEDESQTPVPGTGPLGSPGVSSIGQQNQQQHQLMQDPNTSLFQGLPQNLLNSVQLPSEAYWGTGGRPPY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	1.41	0.9804
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.002G041600 [exp]	3.46	0.9733
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191400 [exp]	4.47	0.9776
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	4.58	0.9794
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.009G075100 [exp]	4.89	0.9644
AT2G23770			protein kinase family protein ...		Potri.005G128300 [exp]	5.91	0.9757
					Potri.013G145900 [exp]	6.48	0.9579
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	8.48	0.9680
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	9.94	0.9680
AT5G22890	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.004G217100 [exp]	10.48	0.9658

Compare expression of checked genes

Potri.002G149300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.