Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01950 1360 / 0 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT1G12430 1231 / 0 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G54870 518 / 2e-169 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT3G63480 208 / 1e-58 ATP binding microtubule motor family protein (.1.2) AT1G72250 206 / 1e-54 Di-glucose binding protein with Kinesin motor domain (.1.2) AT2G22610 204 / 6e-54 Di-glucose binding protein with Kinesin motor domain (.1.2) AT3G17360 201 / 7e-53 POK1 phragmoplast orienting kinesin 1 (.1) AT1G59540 197 / 2e-52 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G44730 197 / 8e-52 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT2G28620 197 / 8e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G070900 [exp] 1672 / 0 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.003G117000 [exp] 1294 / 0 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 1281 / 0 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.010G227000 [exp] 542 / 7e-177 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.008G035400 [exp] 282 / 1e-88 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 210 / 3e-59 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.014G013300 [exp] 201 / 1e-53 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.016G082400 [exp] 200 / 8e-53 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 199 / 1e-52 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009241 [exp] 1416 / 0 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038007 [exp] 1330 / 0 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 1205 / 0 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10006670 [exp] 1072 / 0 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10038696 [exp] 519 / 7e-169 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10037965 [exp] 512 / 7e-165 AT1G01950 920 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10009073 [exp] 204 / 4e-54 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 200 / 8e-53 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024429 [exp] 199 / 4e-52 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10017113 [exp] 199 / 4e-52 AT3G17360 1085 / 0.0 phragmoplast orienting kinesin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.002G149400.1 pacid=42780062 polypeptide=Potri.002G149400.1.p locus=Potri.002G149400 ID=Potri.002G149400.1.v4.1 annot-version=v4.1 ATGGCATCATCATCATCGTCAAGTAACAGTGCTTTTCGAAATGGCAGCAGCAGCGCTCAAAGGCCACTTAAACCCCTCACTGCTTCTAATCTCAAATCTT CCTCTTTCAAATCCAGAGTCCACCTCTCTCACGCTCCTCCCCCATCTTTCCGCCGCAGCTACCCTTCCACTTTCTCCGCCTCCGACGACGGAGTGCCGGG AAGAGTTAGAGTGGCGGTGAGATTGCGGCCGCGAAATGCGGAGGAGTTGGCAGCAGATGCGGATTTTGCCGATTATGTTGAATTGCAGCCTGAGCTTAAG AGGTTGAAGCTTCGAAAAAACAATTGGGATGCGGATACATATGAGTTCGATGACGTGCTTACTGAATTCGCGTCTCAGAAGCGTGTTTATGAAGCTGTTG CTAAGCCTGTTGTTGAGAGTGTTTTAGATGGTTACAATGGGACAGTGATGGCTTATGGTCAGACCGGTACTGGGAAAACTTTTACTCTTGGACACCTGGG AGAGGATGATACCTCTTCTCGTGGGATCATGGTTCGTGCAATGGAGGATATTTTAGCAAAAATCTCTCCAGAGACTGATTCTGTCTCAGTATCATATTTG CAGCTTTATATGGAGGCTGTCCAGGACCTTCTTGTTCCGGCAAACGATAATATTTCTATTGTGGAAGATCCAAAAACTGGTGATGTTTCAGTACCTGGGG CAACTGTTGCAGAAATCAGGGACCAGCAGAGTATTGTGGAACTGCTAAGATTAGGGGAAGCTCATAGAATTGCTGCGAATACGAAGTTGAATACTGAATC TTCTCGTAGTCATGCTATTCTAATGGTTCAGGTTAAGAGGTCATTTACAGGACGAGAAGATGCTCTTTCAAGTGAAATTGATAATTCATCTCATTTGGTC AAACCTTCAAAACCTATTGTTCGGAAAAGCAAGCTGGTTTTGGTAGATCTGGCTGGTTCAGAACGTGTTCACAAGTCAGGAAGCGAGGGACATATGCTAG AGGAAGCTAAGTCTATTAATCTCTCACTGAGTGCACTAGGGAAGTGCATAAATGCACTGGCTGAGAATAGTTCTCATGTTCCAATTCGCGATTCAAAACT TACGAGGTTGCTTAAAGATTCATTTGGAGGAACTGCAAGAACTTCTTTAATTGTGACCATTGGCCCTTCACCATGCCACAGGGGCGAGACTTCGAGCACT ATATTGTTTGGACAAAGGGCAATGAAGGTGGAGAACATGCTGAAAATAAAGGAAGAGTTTGATTACAAAAGTTTATCTAGAAAGCTTGAAATACAAGTAG ACAAGCTCATTGCAGAAAATGAAAGGCAGCAGAAAGCCTTTGACAATGAAGTTGAAAGAATAAATCAAGAAGCACAAAATCGTATTGCTGAGGTGGAAAG GAACTTTGCAGAAGCCTTAGAGAAGGAGAGGCTAAAGTGTCAGATGGAATACATGGAATCTGTCAAGGAGCTAGAGGAAAAATTGTTAGCAAATCAGCAA AGGCATGGCCGTGATGACTTCATCAATGATAATTGCAATGGAGAGGAGCTGGGCCCTGTTTCTGAGGAAGTTTCTGATCTCAGAAAGTTGCTTCAAAATG AAATTCAGTTAAGAAAGGCGGCTGAAGATGAGATCAACAAACTTAAGGGACAATATGAGCAATTTATGCAGCCAGGGGCTGGTGGAGATACAGAGATCAT AAGGCTTCACAAGATATTGGAGGATGAGGCTTATAAGAAAAGGAAACTGGAAGAAGAAGTTGTGATCCTACAAAGTCAGTTGTTGCAGTTGACTTTTGAA GCTGATCAGGCAAAAAGGTATCTTGAAAGAAGTGGATCCACAAATGGTTTCAGTGGTGTAGATTCTCTCATGTCGCAAGCTAGGAATTCACAATTTAAAG AGACTATGAATGGACAGAAGGCTCCGACTGCCTCACTTTTTGAACACGTTGGATTGCAAAAGATTTTGTCACTGCTTGAGTCAGAAGATGCGAATGTACG AATACATGCTGTAAAAGTGGTGGCTAATCTAGCAGCTGAAGAAGCAAATCAAGAAAGGATTGTTGAATCTGGTGGTCTTACTTCCTTGCTGATGGTCCTT AGAAGCTTTGAGGATGAAACTATTCGCAGAGTAGCAGCAGGTGCAATTGCCAATCTTGCAATGAATGAAGCCAATCAAGAACTAATCATGGTTCAAGGGG GGATTAGTTTGTTATCTATGACAGCAGCTGATGCTGAGGATCCTCAAACTCTACGCATGGTTTCTGGAGCTATTGCAAATCTATGTGGAAATGATAAGCT ACAAATGAAGCTGAGGTCTGAAGGTGGGATAAGAGCTCTGCTAGGAATGGTGAGGTGTGGACATCCTGATGTTCTTTCCCAAGTAGCTCGTGGGATTGCA AACTTTGCAAAATGCGAGTCCCGGGCATCTACTCAAGGATTAAAAAGTGGCAGATCTCTTCTTATAGAAGACGGCGCACTTCCATGGATTGTACAAAATG CTAATAATGAAGCTGCACCAATCAGACGCCACATTGAGCTTGCTCTATGTCACTTGGCTCAGCAAGAAGTAAATGCAAAAGAAATGATCAGTGGAGGTGC ACTTTGGGAGCTAGTTCGTATCTCACGTTATTGTTCTCGAGAGGACATAAGAGCTCTTGCTCATCGGACTTTGAATTCAAGTTCCACCTTCAGGTCTGAA ATGCGGCGGTTACGGATAGAGTGTTGA
AA sequence Show only first row Show all	>Potri.002G149400.1 pacid=42780062 polypeptide=Potri.002G149400.1.p locus=Potri.002G149400 ID=Potri.002G149400.1.v4.1 annot-version=v4.1 MASSSSSSNSAFRNGSSSAQRPLKPLTASNLKSSSFKSRVHLSHAPPPSFRRSYPSTFSASDDGVPGRVRVAVRLRPRNAEELAADADFADYVELQPELK RLKLRKNNWDADTYEFDDVLTEFASQKRVYEAVAKPVVESVLDGYNGTVMAYGQTGTGKTFTLGHLGEDDTSSRGIMVRAMEDILAKISPETDSVSVSYL QLYMEAVQDLLVPANDNISIVEDPKTGDVSVPGATVAEIRDQQSIVELLRLGEAHRIAANTKLNTESSRSHAILMVQVKRSFTGREDALSSEIDNSSHLV KPSKPIVRKSKLVLVDLAGSERVHKSGSEGHMLEEAKSINLSLSALGKCINALAENSSHVPIRDSKLTRLLKDSFGGTARTSLIVTIGPSPCHRGETSST ILFGQRAMKVENMLKIKEEFDYKSLSRKLEIQVDKLIAENERQQKAFDNEVERINQEAQNRIAEVERNFAEALEKERLKCQMEYMESVKELEEKLLANQQ RHGRDDFINDNCNGEELGPVSEEVSDLRKLLQNEIQLRKAAEDEINKLKGQYEQFMQPGAGGDTEIIRLHKILEDEAYKKRKLEEEVVILQSQLLQLTFE ADQAKRYLERSGSTNGFSGVDSLMSQARNSQFKETMNGQKAPTASLFEHVGLQKILSLLESEDANVRIHAVKVVANLAAEEANQERIVESGGLTSLLMVL RSFEDETIRRVAAGAIANLAMNEANQELIMVQGGISLLSMTAADAEDPQTLRMVSGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA NFAKCESRASTQGLKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQQEVNAKEMISGGALWELVRISRYCSREDIRALAHRTLNSSSTFRSE MRRLRIEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Potri.002G149400 [exp]	0	1
AT3G03810		EDA30	embryo sac development arrest ...		Potri.019G036600 [exp]	2.44	0.8399
AT5G18500			Protein kinase superfamily pro...		Potri.008G214200 [exp]	4.47	0.8417
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.019G031000 [exp]	11.22	0.8429	Pt-APY1.4
AT5G56510		APUM12	pumilio 12 (.1)		Potri.003G222300 [exp]	14.45	0.8429
AT1G01510		AN	ANGUSTIFOLIA, NAD(P)-binding R...		Potri.014G089400 [exp]	18.89	0.8418
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	19.39	0.8356
AT1G08350			Endomembrane protein 70 protei...		Potri.004G203200 [exp]	27.38	0.7899
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	29.88	0.8187
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.011G169300 [exp]	33.91	0.7372	WRKY2.1
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	34.19	0.8360

Compare expression of checked genes

Potri.002G149400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.