Plant FIBer expression Database

Pt-DHDPS2.1 (Potri.002G149500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-DHDPS2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G45440 592 / 0 DHDPS2 dihydrodipicolinate synthase (.1)
AT3G60880 580 / 0 DHDPS, DHDPS1 dihydrodipicolinate synthase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G071100
[exp]
668 / 0 AT2G45440 585 / 0.0 dihydrodipicolinate synthase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015861
[exp]
588 / 0 AT2G45440 605 / 0.0 dihydrodipicolinate synthase (.1)
Lus10009302
[exp]
578 / 0 AT2G45440 604 / 0.0 dihydrodipicolinate synthase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0036 TIM_barrel PF00701 DHDPS Dihydrodipicolinate synthetase family
Representative CDS sequence
>Potri.002G149500.1 pacid=42778252 polypeptide=Potri.002G149500.1.p locus=Potri.002G149500 ID=Potri.002G149500.1.v4.1 annot-version=v4.1
ATGGCCGCCATGATGAGCTATAGCGTATGCTTGAGGGAGTCTACTCTCCAGTTTCCGCGTCCTAATTGCGGTGATAATTACAAGAGGAGGGGTGGAAAAT
GGAGATCTCCACAAGCTGCTGCAATACCAGATCTTCATCTTCCAATGCGTAGTTTTGAAGTTAAAAACAGGACATCAGCAGAGGATATAAAATCTCTTAG
ATTGATAACAGCCATCAAAACCCCGTATCTGCCTGATGGTAGATTCGATCTCGAAGCATATGACGCGTTGGTGAATATGCAGATTGTTAATGGTGCTGAA
GGTGTGATAGTTGGTGGCACAACTGGTGAAGGCCAGCTAATGAGCTGGGACGAACACATAATGCTCATAGGCCACACTGTTAATTGTTTTGGTAGCTCAG
TGAAGGTGATTGGAAACACTGGAAGTAACTCTACAAGGGAAGCGATTCATGCCACAGAGCAAGGTTTTGCAGTTGGAATGCATGCTGCTCTTCACATCAA
TCCTTACTATGGCAAGACCTCCGTGGAGGGGATGGTTTCTCATTTTGACTGTGTGCTACCTATGGGTCCCACTATCATATACAATGTGCCATCCAGAACT
GGCCAAGATATTCCCCCACGTGTTATTCATACTATAGCACAGAGTCCAAACCTGGCAGGAGTCAAGGAATGTGTTGGTAATGATCGGGTTGAACAATATA
CAGATAAAGGAATTGTGGTGTGGAGTGGGAACGATGATCAATGCCATGATGCTAGGTGGAACCATGGGGCTACTGGTGTGATTTCTGTTACTAGCAACTT
GCTTCCAGGCTTGATGCGGAAACTCATGTTTGAGGGGAAGAATTCTGAACTAAATTCAAAACTCCTACCGCTTATTGACTGGTTATTTCAGGAGCCAAAC
CCCATTGCATTAAACACAGCTCTTGCTCAGCTTGGGGTTGTAAGGCCAGTTTTCAGGCTGCCATATATGCCTCTTCCTCTGGCTAAGAGGATAGAATTTG
TGAATTTGGTGAAGAAAATTGGCCGGGAGAATTTTGTAGGAGAAAACAACGTTCAGGTTCTTGATGATGATGACTTCATCTTGATAAGTCGGTATTAG
AA sequence
>Potri.002G149500.1 pacid=42778252 polypeptide=Potri.002G149500.1.p locus=Potri.002G149500 ID=Potri.002G149500.1.v4.1 annot-version=v4.1
MAAMMSYSVCLRESTLQFPRPNCGDNYKRRGGKWRSPQAAAIPDLHLPMRSFEVKNRTSAEDIKSLRLITAIKTPYLPDGRFDLEAYDALVNMQIVNGAE
GVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGSSVKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSVEGMVSHFDCVLPMGPTIIYNVPSRT
GQDIPPRVIHTIAQSPNLAGVKECVGNDRVEQYTDKGIVVWSGNDDQCHDARWNHGATGVISVTSNLLPGLMRKLMFEGKNSELNSKLLPLIDWLFQEPN
PIALNTALAQLGVVRPVFRLPYMPLPLAKRIEFVNLVKKIGRENFVGENNVQVLDDDDFILISRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G45440 DHDPS2 dihydrodipicolinate synthase (... Potri.002G149500
[exp]
0 1 Pt-DHDPS2.1
AT3G17465 RPL3P ribosomal protein L3 plastid (... Potri.008G207000
[exp]
4.47 0.8392 RPL3.2
AT5G26800 unknown protein Potri.005G011800
[exp]
5.47 0.7973
AT2G30200 EMB3147 EMBRYO DEFECTIVE 3147, catalyt... Potri.009G077800
[exp]
5.91 0.7841
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
6.48 0.7900
AT3G13920 RH4, TIF4A1, EI... eukaryotic translation initiat... Potri.003G043700
[exp]
11.22 0.7599
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.003G181200
[exp]
11.48 0.7690
AT4G26400 RING/U-box superfamily protein... Potri.017G038300
[exp]
12.48 0.7690
AT3G56070 ROC2 rotamase cyclophilin 2 (.1.2) Potri.019G014396
[exp]
15.19 0.8059
AT5G04520 Protein of unknown function DU... Potri.010G233000
[exp]
15.71 0.7688
AT1G80560 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DE... Potri.001G185600
[exp]
17.74 0.7498

Potri.002G149500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.